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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">\r
+<html><!-- InstanceBegin template="/Templates/jtemplate.dwt" codeOutsideHTMLIsLocked="false" -->\r
+<head>\r
+<!-- InstanceBeginEditable name="doctitle" --> \r
+<TITLE>JalView - Java alignment editor</TITLE>\r
+<!-- InstanceEndEditable --> \r
+<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">\r
+<!-- InstanceBeginEditable name="head" --><!-- InstanceEndEditable --> \r
+<style type="text/css">\r
+<!--\r
+td {\r
+ font-family: Geneva, Arial, Helvetica, sans-serif;\r
+ font-size: 12px;\r
+}\r
+-->\r
+</style>\r
+</head>\r
+\r
+<body>\r
+<div align="left">\r
+ <table border="0">\r
+ <tr> \r
+ <td width="700" ><center>\r
+ <table width="550" border="0">\r
+ <tr>\r
+ <td width="45%"><div align="center"><a href="http://www.compbio.dundee.ac.uk/~andrew/JalviewWebsite/index.html"><img src="../../snap22med.gif" width="291" height="116" border="0" align="absmiddle"></a></div></td>\r
+ <td width="55%"><div align="center"><font size="+6"><strong><font face="Geneva, Arial, Helvetica, sans-serif">Jalview \r
+ </font></strong></font> </div>\r
+ <div align="center"><font size="3" face="Geneva, Arial, Helvetica, sans-serif">a \r
+ multiple alignment editor</font> </div></td>\r
+ </tr>\r
+ </table>\r
+ </center></td>\r
+ </tr>\r
+ </table>\r
+ <br>\r
+ <table border="0">\r
+ <tr> \r
+ <td width="197" valign="top" nowrap> <p><strong>Downloads</strong></p>\r
+ <ul>\r
+ <li><a href="../index.html">Jalview</a></li>\r
+ </ul>\r
+ <strong>Examples</strong> <ul>\r
+ <li><a href="applets.html">Applet</a></li>\r
+ <li><a href="examples.html">Application</a></li>\r
+ </ul>\r
+ <strong>Reference</strong> <ul>\r
+ <li> <a href="../../jalview.pdf" target="_blank">"The Jalview Java<br>\r
+ Alignment Editor,"<br>\r
+ </a></li>\r
+ <a href="../../jalview.pdf"><em>Bioinformatics</em>, 12, 426-7</a> \r
+ </ul>\r
+ <strong>Source Code</strong> <ul>\r
+ <li>Jalview 2</li>\r
+ </ul>\r
+ <p><strong>Feedback</strong></p>\r
+ <p> <img src="../../help.gif" width="151" height="43"> </p>\r
+ <p><br>\r
+ <a href="http://www.bbsrc.ac.uk/"> <img border="0"src="../../bbsrc.jpg"></a> \r
+ </p></td>\r
+ <td width="499" valign="top"><!-- InstanceBeginEditable name="Contents" --> \r
+ <p align="center">Jalview maintains the ability to perform Principal Component \r
+ Analysis on an alignment. The method is used to cluster similar sequences, \r
+ the user may then select sequences from this 3D visual display.</p>\r
+ <p align="center"><img src="pca.gif" width="394" height="396"></p>\r
+ <p align="center"><br>\r
+ PDB structures may be displayed if Jalview can find a match of the input \r
+ sequence and Uniprot. </p>\r
+ <p align="center"><img src="pdb.gif" width="395" height="397"></p>\r
+ <p align="center"><strong><a href="examples4.html"><font size="3">< \r
+ Back</font></a></strong></p>\r
+ <!-- InstanceEndEditable --> \r
+ </td>\r
+ </tr>\r
+ </table>\r
+</div>\r
+</body>\r
+<!-- InstanceEnd --></html>\r