--- /dev/null
+PileUp\r
+\r
+\r
+\r
+ MSF: 487 Type: P Check: 4627 .. \r
+\r
+ Name: LIP1_CANFA oo Len: 487 Check: 678 Weight: 1.00\r
+ Name: LIP2_MOUSE oo Len: 487 Check: 2632 Weight: 1.00\r
+ Name: LIPH_HUMAN oo Len: 487 Check: 2807 Weight: 1.00\r
+ Name: LIPH_MOUSE oo Len: 487 Check: 1096 Weight: 1.00\r
+ Name: LIPH_RAT oo Len: 487 Check: 1917 Weight: 1.00\r
+ Name: LIPL_BOVIN oo Len: 487 Check: 3520 Weight: 1.00\r
+ Name: LIPL_CAVPO oo Len: 487 Check: 9282 Weight: 1.00\r
+ Name: LIPL_CHICK oo Len: 487 Check: 7040 Weight: 1.00\r
+ Name: LIPL_HUMAN oo Len: 487 Check: 3879 Weight: 1.00\r
+ Name: LIPL_MOUSE oo Len: 487 Check: 5123 Weight: 1.00\r
+ Name: LIPL_RAT oo Len: 487 Check: 3636 Weight: 1.00\r
+ Name: LIPP_HORSE oo Len: 487 Check: 3071 Weight: 1.00\r
+ Name: LIPP_HUMAN oo Len: 487 Check: 243 Weight: 1.00\r
+ Name: LIPP_PIG oo Len: 487 Check: 3267 Weight: 1.00\r
+ Name: LIPP_RABIT oo Len: 487 Check: 5962 Weight: 1.00\r
+ Name: LIPP_RAT oo Len: 487 Check: 474 Weight: 1.00\r
+\r
+//\r
+\r
+\r
+\r
+LIP1_CANFA KEVCYEQIGC FSDAEPWAG. TAIRPLKVLP WSPERIGTRF LLYTNKNP.N \r
+LIP2_MOUSE KEVCYGHLGC FSNDKPWAG. MIQRPSKIFP WSPEDIDTRF LLYTNENP.N \r
+LIPH_HUMAN SSALGQSLKP EPFGRRAQA. ......VETN KTLHEMKTRF LLFGETN... \r
+LIPH_MOUSE SSACGQGVGT EPFGRSLGA. ......TEAS KPLKKPETRF LLFQDEND.R \r
+LIPH_RAT SSACGQGVGT EPFGRNLGA. ......TEER KPLQKPEIRF LLFKDESD.R \r
+LIPL_BOVIN LDPAGPNFEY AEDRITGG.. .......... KDFRDIESKF ALRTPEDTAE \r
+LIPL_CAVPO MNIDRKILNK ALAKEKVAN. ........CQ KDYTDIESKF ARRTPENTVE \r
+LIPL_CHICK KTALLAVLCL CLRGAAGSD. ......PEAE MNFEGIESKF SLRTPAEPDE \r
+LIPL_HUMAN LAVWLQSLTA SRGGVAAAD. ........QR RDFIDIESKF ALRTPEDTAE \r
+LIPL_MOUSE LGVWLQSLTA FRGGVAAAD. ........AG RDFSDIESKF ALRTPEDTAE \r
+LIPL_RAT LGVWLQSLTA FRGGVAAAD. ........GG RDFSDIESKF ALRTPEDTAE \r
+LIPP_HORSE NEVCYERLGC FSDDSPWAG. IVERPLKILP WSPEKVNTRF LLYTNENP.D \r
+LIPP_HUMAN KEVCYERLGC FSDDSPWSG. ITERPLHILP WSPKDVNTRF LLYTNENP.N \r
+LIPP_PIG SEVCFPRLGC FSDDAPWAG. IVQRPLKILP PD.KDVDTRF LLYTNQNQ.N \r
+LIPP_RABIT LEVCYERLGC FGNRIPWSGG TLERPFSTLP STPKIVNTRF LLYTNENP.N \r
+LIPP_RAT KEVCFDKLGC FSDDAPWSG. TIDRPLKALP WSPAQINTRF LLYTNENQ.D \r
+\r
+\r
+LIP1_CANFA NFQTLLPSDP STIEASNFQT DKKTRFIIHG FIDKGE.ENW LLDMCKNMFK \r
+LIP2_MOUSE NYQIISATDP ATINASNFQL DRKTRFIIHG FIDKGE.EGW LLDMCKKMFQ \r
+LIPH_HUMAN QGCQIRINHP DTLQECGFNS SLPLVMIIHG WSVDGVLENW IWQMVAALKS \r
+LIPH_MOUSE LGCRLRPQHP ETLQECGFNS SQPLIMIIHG WSVDGLLENW IWKIVSALKS \r
+LIPH_RAT LGCQLRPQHP ETLQECGFNS SHPLVMIIHG WSVDGLLETW IWKIVGALKS \r
+LIPL_BOVIN DTCHLIPGVT ESVANCHFNH SSKTFVVIHG WTVTGMYESW VPKLVAALYK \r
+LIPL_CAVPO DTCHLIPGVT ESVANCHFNH SSKTFMVIHG WTVTGMYESW VPKLVAALYK \r
+LIPL_CHICK DVCYLVPGQM DSLAQCNFNH TSKTFVVIHG WTVTGMYESW VPKLVDALYK \r
+LIPL_HUMAN DTCHLIPGVA ESVATCHFNH SSKTFMVIHG WTVTGMYESW VPKLVAALYK \r
+LIPL_MOUSE DTCHLIPGLA DSVSNCHFNH SSKTFVVIHG WTVTGMYESW VPKLVAALYK \r
+LIPL_RAT DTCHLIPGLA DSVSNCHFNH SSKTFVVIHG WTVTGMYESW VPKLVAALYK \r
+LIPP_HORSE NFQEIV.ADP STIQSSNFNT GRKTRFIIHG FIDKGE.ESW LSTMCQNMFK \r
+LIPP_HUMAN NFQEVA.ADS SSISGSNFKT NRKTRFIIHG FIDKGE.ENW LANVCKNLFK \r
+LIPP_PIG NYQELV.ADP STITNSNFRM DRKTRFIIHG FIDKGE.EDW LSNICKNLFK \r
+LIPP_RABIT NFQEIS.ADA STIRGSNFRT DRKTRFIIHG FTDKGE.ENW LSNLCENLFQ \r
+LIPP_RAT NYQKIT.SDA SSIRNSNFKT NRKTRIIIHG FIDKGE.ENW LSDMCKNMFK \r
+\r
+\r
+LIP1_CANFA V...EEVNCI CVDWKKGSQT SYTQAANNVR VVGAQVAQML SMLSANYSYS \r
+LIP2_MOUSE V...EKVNCI CVDWKRGSRT EYTQASYNTR VLGAEIAFLV QVLSTEMGYS \r
+LIPH_HUMAN QPAQP.VNVG LVDWITLAHD HYTIAVRNTR LVGKEVAALL RWLEESVQLS \r
+LIPH_MOUSE RQSQP.VNVG LVDWISLAYQ HYTIAVQNTR IVGQDVAALL LWLEESAKFS \r
+LIPH_RAT RQSQP.VNVG LVDWISLAYQ HYAIAVRNTR VVGQEVAALL LWLEESMKFS \r
+LIPL_BOVIN R..EPDSNVI VVDWLSRAQQ HYPVSAGYTK LVGQDVAKFM NWMADEFNYP \r
+LIPL_CAVPO R..EPDSNVI VVDWLRRAQH HYPESADYTK LVGEDVARFI NWMEDEFKYS \r
+LIPL_CHICK R..EPDSNVI VVDWLVRAQQ HYPVSAAYTK LVGKDVAMFI DWMEEKFNYP \r
+LIPL_HUMAN R..EPDSNVI VVDWLSRAQE HYPVSAGYTK LVGQDVARFI NWMEEEFNYP \r
+LIPL_MOUSE R..EPDSNVI VVDWLYRAQQ HYPVSAGYTK LVGNDVARFI NWMEEEFNYP \r
+LIPL_RAT R..EPDSNVI VVDWLYRAQQ HYPVSAGYTK LVGNDVARFI NWLEEEFNYP \r
+LIPP_HORSE V...ESVNCI CVDWKSGSRT AYSQASQNVR IVGAEVAYLV GVLQSSFDYS \r
+LIPP_HUMAN V...ESVNCI CVDWKGGSRT GYTQASQNIR IVGAEVAYFV EFLQSAFGYS \r
+LIPP_PIG V...ESVNCI CVDWKGGSRT GYTQASQNIR IVGAEVAYFV EVLKSSLGYS \r
+LIPP_RABIT V...ETVNCI CVDWKGGSRT TYPQATQNIR IVGAEVAYLV GTLQSSLGYS \r
+LIPP_RAT V...ESVNCI CVDWKGGSRA TYTQATQNVR VVGAEVALLV NVLKSDLGHP \r
+\r
+\r
+LIP1_CANFA PSQVQLIGHS LGAHVAGEAG SRTPG...LG RITGLDPVEA SFQGTPEEVR \r
+LIP2_MOUSE PENVHLIPHS LGSHVAGEAG RRLEGH..VG RITGLDPAEP CFQGLPEEVR \r
+LIPH_HUMAN RSHVHLIGYS LGAHVSGFAG SSIGGTHKIG RITGLDAAGP LFEGSAPSNR \r
+LIPH_MOUSE RSKVHLIGYS LGAHVSGFAG SSMDGKNKIG RITGLDPAGP MFEGTSPNER \r
+LIPH_RAT RSKVHLIGYS LGAHVSGFAG SSMGGKRKIG RITGLDPAGP MFEGTSPNER \r
+LIPL_BOVIN LGNVHLLGYS LGAHAAGIAG SLTN..KKVN RITGLDPAGP NFEYAEAPSR \r
+LIPL_CAVPO VDNVHLLGYS LGAHAAGVAG SRTN..TKVS RITGLDPAGP NFEYAEATSR \r
+LIPL_CHICK LNNVHLLGYS LGAHAAGIAG SLTK..KKVN RITGLDPAGP TFEYADAPIR \r
+LIPL_HUMAN LDNVHLLGYS LGAHAAGIAG SLTN..KKVN RITGLDPAGP NFEYAEAPSR \r
+LIPL_MOUSE LDNVHLLGYS LGAHAAGVAG SLTN..KKVN RITGLDPAGP NFEYAEAPSR \r
+LIPL_RAT LDNVHLLGYS LGAHAAGVAG SLTN..KKVN RITGLDPAGP NFEYAEAPSR \r
+LIPP_HORSE PSNVHIIGHS LGSHAAGEAG RRTNGA..VG RITGLDPAEP CFQGTPELVR \r
+LIPP_HUMAN PSNVHVIGHS LGAHAAGEAG RRTNGT..IG RITGLDPAEP CFQGTPELVR \r
+LIPP_PIG PSNVHVIGHS LGSHAAGEAG RRTNGT..IE RITGLDPAEP CFQGTPELVR \r
+LIPP_RABIT PSNIHVIGHS LGAHAAGEVG RRTNGT..IG RITGLDPAEP YFQGTPEIVR \r
+LIPP_RAT PDNVHLIGHS LGSHVAGEAG KRTFGA..IG RITGLDAAEP YFQGTPEEVR \r
+\r
+\r
+LIP1_CANFA LDPTDADFVD VIHTDAAPLI PFLGFGTSQQ MGHLDFFPNG GEEMPGCKKN \r
+LIP2_MOUSE LDPSDAMFVD VIHTDSAPII PYLGFGMSQK VGHLDFFPNG GKEIPGCQKN \r
+LIPH_HUMAN LSPDDANFVD AIHTFTR.EH MGLSVGIKQP IGHYDFYPNG GSFQPGCHFL \r
+LIPH_MOUSE LSPDDANFVD AIHTFTR.EH MGLSVGIKQP IAHYDFYPNG GSFQPGCHFL \r
+LIPH_RAT LSPDDANFVD AIHTFTR.EH MGLSVGIKQP IAHYDFYPNG GSFQPGCHFL \r
+LIPL_BOVIN LSPDDADFVD VLHTFTR.GS PGRSIGIQKP VGHVDIYPNG GTFQPGCNIG \r
+LIPL_CAVPO LSPDDAQFVD VLHTFTR.GS PGRSIGIQKP VGHVDIYPNG GSFQPGCNIQ \r
+LIPL_CHICK LSPDDADFVD VLHTYTR.GS PDRSIGIQKP VGHIDIYPNG GGFQPGCNLG \r
+LIPL_HUMAN LSPDDADFVD VLHTFTR.GS PGRSIGIQKP VGHVDIYPNG GTFQPGCNIG \r
+LIPL_MOUSE LSPDDADFVD VLHTFTR.GS PGRSIGIQKP VGHVDIYPNG GTFQPGCNIG \r
+LIPL_RAT LSPDDADFVD VLHTFTR.GS PGRSIGIQKP VGHVDIYPNG GTFQPGCNIG \r
+LIPP_HORSE LDPSDAQFVD VIHTDIAPFI PNLGFGMSQT AGHLDFFPNG GKEMPGCQKN \r
+LIPP_HUMAN LDPSDAKFVD VIHTDGAPIV PNLGFGMSQV VGHLDFFPNG GVEMPGCKKN \r
+LIPP_PIG LDPSDAKFVD VIHTDAAPII PNLGFGMSQT VGHLDFFPNG GKQMPGCQKN \r
+LIPP_RABIT LDPSDAQFVD VIHTDAAPMV PNLGFGMSQT VGHLDFFPNG GKEMPGCQKN \r
+LIPP_RAT LDPTDAQFVD AIHTDAAPII PNLGFGMSQT VGHLDFFPNG GMEMPGCQKN \r
+\r
+\r
+LIP1_CANFA ALSQIVDLDG IWEGTRDFVA CNHLRSYKYY SESILNPDG. FASYPCASYR \r
+LIP2_MOUSE ILSTIVDING IWEGTRNFAA CNHLRSYKYY ASSILNPDG. FLGYPCSSYE \r
+LIPH_HUMAN ELYRHIAQHG FNAITQ.TIK CSHERSVHLF IDSLLHAGTQ SMAYPCGDMN \r
+LIPH_MOUSE ELYKHIAEHG LNAITQ.TIK CAHERSVHPF IDSLQHSDLQ SIGFQCSDMG \r
+LIPH_RAT ELYKHIAEHG LNAITQ.TIN CAHERSVHLF IDSLQHSNLQ NTGFQCSNMD \r
+LIPL_BOVIN EALRVIAERG LGDVDQ.LVK CSHERSVHLF IDSLLNEENP SKAYRCNSKE \r
+LIPL_CAVPO DALRVISQKG FGDMDQ.LVK CSHERSIHLF IDSLLNEENP SKAYRCNSKE \r
+LIPL_CHICK EALRLIAEKG FSDVDQ.LVK CSHERSIHLF IDSLLYEEKP SMAYRCNTKE \r
+LIPL_HUMAN EAIRVIAERG LGDVDQ.LVK CSHERSIHLF IDSLLNEENP SKAYRCSSKE \r
+LIPL_MOUSE EAIRVIAERG LGDVDQ.LVK CSHERSIHLF IDSLLNEENP SKAYRCNSKE \r
+LIPL_RAT EAIRVIAEKG LGDVDQ.LVK CSHERSIHLF IDSLLNEENP SKAYRCNSKE \r
+LIPP_HORSE VLSQIVDIDG IWQGTRDFAA CNHLRSYKYY TDSILNPDG. FAGFSCASYS \r
+LIPP_HUMAN ILSQIVDIDG IWEGTRDFAA CNHLRSYKYY TDSIVNPDG. FAGFPCASYN \r
+LIPP_PIG ILSQIVDIDG IWEGTRDFVA CNHLRSYKYY ADSILNPDG. FAGFPCDSYN \r
+LIPP_RABIT VLSQIVDING VWEGTRDFVA CNHLRSYKYY ADSIVNPNG. FAGFSCASYT \r
+LIPP_RAT ILSQIVDIDG IWEGTRDFAA CNHLRSYKYY TDSIVNPTG. FSGFSCSSYN \r
+\r
+\r
+LIP1_CANFA AFESNKCFPC PDQGCPQMGH YADKFAVKTS DETQKYFLNT GDSSNFARWR \r
+LIP2_MOUSE KFQHNDCFPS PEQGCPKMGH YADQFEGKTA TVEQTFFLNT ADTGNFTRWR \r
+LIPH_HUMAN SFSQGLCLSC KKGRCNTLGY HVRQEPRSKS ...KRLFLVT RAQSPFKVYH \r
+LIPH_MOUSE SFSQGLCLSC KKGRCNTLGY DIRKDRSGKS ...KRLFLIT RAQSPFKVYH \r
+LIPH_RAT SFSQGLCLNC KKGRCNSLGY DIRRIGHVKS ...KTLFLIT RAQSPFKVYH \r
+LIPL_BOVIN AFEKGLCLSC RKNRCNNMGY EINKVRAKRS ...SKMYLKT RSQMPYKVFH \r
+LIPL_CAVPO AFEKGLCLSC RKNRCNNVGY EINKVRAKRS ...SKMYLKT RSQMPYKVFH \r
+LIPL_CHICK AFEKGLCLSC RKNRCNNLGY KVNRVRTKRN ...TKMYLKT RAQMPYKVFH \r
+LIPL_HUMAN AFEKGLCLSC RKNRCNNLGY EINKVRAKRS ...SKMYLKT RSQMPYKVFH \r
+LIPL_MOUSE AFEKGLCLSC RKNRCNNLGY EINKVRAKRS ...SKMYLKT RSQMPYKVFH \r
+LIPL_RAT AFEKGLCLSC RKNRCNNVGY EINKVRAKRS ...SKMYLKT RSQMPYKVFH \r
+LIPP_HORSE DFTANKCFPC SSEGCPQMGH YADRFPGRTK GVGQLFYLNT GDASNFARWR \r
+LIPP_HUMAN VFTANKCFPC PSGGCPQMGH YADRYPGKTN DVGQKFYLDT GDASNFARWR \r
+LIPP_PIG VFTANKCFPC PSEGCPQMGH YADRFPGKTN GVSQVFYLNT GDASNFARWR \r
+LIPP_RABIT AFSANKCFPC SN.GCPQMGH YADRFSRKTD GVGQTFYLNT GDSSNFARWR \r
+LIPP_RAT VFSANKCFPC GSEGCPQMGH YADKYPGKTK ELYQKFYLNT GDKSNFARWR \r
+\r
+\r
+LIP1_CANFA YGVSITLSG. ..KR.ATGQA KVALFGSKGN THQFNIFKGI .LKPGSTHSN \r
+LIP2_MOUSE YKVSVTLSGP ..KK.LSGYI LVALYGCNAN SKQYEVFKGS .LQPEARYIR \r
+LIPH_HUMAN YQLKIQFINQ TETP.IQTTF TMSLLGTKEK MQKIPITLGK GIASNKTYSF \r
+LIPH_MOUSE YQFKIQFINQ IEKP.VEPTF TMSLLGTKEE IKRIPITLGE GITSNKTYSF \r
+LIPH_RAT YQFKIQFINQ MEKP.MEPTF TMTLLGTKEE IKKIPITLGE GITSNKTYSL \r
+LIPL_BOVIN YQVKIHFSGT ESNTYTNQAF EISLYGTVAE SENIPFTLPE .VSTNKTYSF \r
+LIPL_CAVPO YQVKIYFSGT ETTTYTNQAF EISLYGTVAE SENIPFTLPE .VSANNTYSF \r
+LIPL_CHICK YQVKIHFFGK TNVTKVDQPF LISLYGTLDE SENIPFTLPE .VSSNKTFSF \r
+LIPL_HUMAN YQVKIHFSGT ESETHTNQAF EISLYGTVAE SENIPFTLPE .VSTNKTYSF \r
+LIPL_MOUSE YQVKIHFSGT ENGKQHNQAF EISLYGTVAE SENIPFTLPE .VSTNKTYSF \r
+LIPL_RAT YQVKIHFSGT ENDKQNNQAF EISLYGTVAE SENIPFTLPE .VATNKTYSF \r
+LIPP_HORSE YRVDVTLSG. ..KK.VTGHV LVSLFGNKGN SRQYEIFQGT .LKPDNTYSN \r
+LIPP_HUMAN YKVSVTLSG. ..KK.VTGHI LVSLFGNKGN SKQYEIFKGT .LKPDSTHSN \r
+LIPP_PIG YKVSVTLSG. ..KK.VTGHI LVSLFGNEGN SRQYEIYKGT .LQPDNTHSD \r
+LIPP_RABIT YQVAVTLSG. ..RR.VTGHV LVSLYGSKGN SKQYEIFTGL .LKPGDTHLN \r
+LIPP_RAT YQVTVTLSG. ..QK.VTGHI LVSLFGNGGN SKQYEVFKGS .LHPGDTHVK \r
+\r
+\r
+LIP1_CANFA EFDAKLDVGT IEKVKFLWNN N..VVNPTFP KVG....... ........AA \r
+LIP2_MOUSE DIDVDVNVGE IQKVKFLWNN K..VINLFRP TMG....... ........AS \r
+LIPH_HUMAN LITLDVDIGE LIMIKFKWEN S..AVWANVW DTVQTIIPWS TGPRHSGLVL \r
+LIPH_MOUSE LITLDKDIGE LILLKFKWEN S..AVWANVW NTVQTIMLWG IEPHHSGLIL \r
+LIPH_RAT LITLNKDIGE LIMLKFKWEN S..AVWANVW NTVQTIMLWD TEPHYAGLIV \r
+LIPL_BOVIN LLYTEVDIGE LLMLKLKWIS DSYFSWSNWW SSP....... ......GFDI \r
+LIPL_CAVPO LIYTEVDIGE LLMLKLKWIT ESYFSWSSWW GRP....... ......TFTI \r
+LIPL_CHICK LIYTEVDIGD LLMLKLQWEK DTFFSWSDWW TPF....... ......AFTI \r
+LIPL_HUMAN LIYTEVDIGE LLMLKLKWKS DSYFSWSDWW SSP....... ......GFAI \r
+LIPL_MOUSE LIYTEVDIGE LLMMKLKWMS DSYFSWPDWW SSP....... ......SFVI \r
+LIPL_RAT LIYTEVDIGE LLMMKLKWKN DSYFRWSDWW SSP....... ......SFVI \r
+LIPP_HORSE EFDSDVEVGD LEKVKFIWYN N..VINLTLP KVG....... ........AS \r
+LIPP_HUMAN EFDSDVDVGD LQMVKFIWYN N..VINPTLP RVG....... ........AS \r
+LIPP_PIG EFDSDVEVGD LQKVKFIWYN NN.VINPTLP RVG....... ........AS \r
+LIPP_RABIT EFDSDVDVGD VQKVKFVWYN N..VINPTLP KVG....... ........AS \r
+LIPP_RAT EFDSDMDVGD LQKVKFIWYN N..VINPTLP KVG....... ........AS \r
+\r
+\r
+LIP1_CANFA KITVQK.GEE KTVHSFCSES TVR....EDV LLTLTPC\r
+LIP2_MOUSE QITLQR.AKD GKEFNFCTSN TVH....EDV LQSLYPC\r
+LIPH_HUMAN KTIRVKAGET QQRMTFCSEN TDDLLLRPTQ EKIFVKC\r
+LIPH_MOUSE KTIWVKAGET QQRMTFCPEN LDDLQLHPSQ EKVFVNC\r
+LIPH_RAT KTIWVKAGET QQRMTFCPDN VDDLQLHPTQ EKVFVKC\r
+LIPL_BOVIN GKIRVKAGET QKKVIFCSRE KMSYLQKGKS PVIFVKC\r
+LIPL_CAVPO EKIRVKAGET QKKIVFCSRE KVSKLQKGKE APVFVKC\r
+LIPL_CHICK QRVRVKSGET QKKVVFCSRD GSSRLGKGEE AAIFVKC\r
+LIPL_HUMAN QKIRVKAGET QKKVIFCSRE KVSHLQKGKA PAVFVKC\r
+LIPL_MOUSE ERIRVKAGET QKKVIFCARE KVSHLQKGKD SAVFVKC\r
+LIPL_RAT EKIRVKAGET QKKVIFCARE KVSHLQKGKD AAVFVKC\r
+LIPP_HORSE KITVER.NDG .SVFNFCSEE TVR....EDV LLTLTAC\r
+LIPP_HUMAN KIIVET.NVG .KQFNFCSPE TVR....EEV LLTLTPC\r
+LIPP_PIG KITVER.NDG .KVYDFCSQE TVR....EEV LLTLNPC\r
+LIPP_RABIT QITVEQ.NDG .RVFKFCSTD TVR....EDI LLTLTPC\r
+LIPP_RAT RISVER.NDG .RVFNFCSQD TVR....EDV LLTLSAC\r
+\r
+\r
git://source.jalview.org / jalview.git / blobdiff