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-<TITLE>JalView - Java alignment editor</TITLE>\r
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- <tr>\r
- <td width="45%"><div align="center"><a href="http://www.compbio.dundee.ac.uk/~andrew/JalviewWebsite/index.html"><img src="../snap22med.gif" width="291" height="116" border="0" align="absmiddle"></a></div></td>\r
- <td width="55%"><div align="center"><font size="+6"><strong><font face="Geneva, Arial, Helvetica, sans-serif">Jalview\r
- </font></strong></font> </div>\r
- <div align="center"><font size="3" face="Geneva, Arial, Helvetica, sans-serif">a\r
- multiple alignment editor</font> </div></td>\r
- </tr>\r
- </table>\r
- </center></td>\r
- </tr>\r
- </table>\r
- <br>\r
- <table border="0">\r
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- <td width="197" valign="top" nowrap> <p><strong>Downloads</strong></p>\r
- <ul>\r
- <li><a href="index.html">Jalview</a></li>\r
- </ul>\r
- <strong>Examples</strong> <ul>\r
- <li><a href="examples/applets.html">Applet</a></li>\r
- <li><a href="examples/examples.html">Application</a></li>\r
- </ul>\r
- <strong>Reference</strong> <ul>\r
- <li> <a href="../jalview.pdf" target="_blank">"The Jalview Java<br>\r
- Alignment Editor,"<br>\r
- </a></li>\r
- <a href="../jalview.pdf"><em>Bioinformatics</em>, 12, 426-7</a>\r
- </ul>\r
- <strong>Source Code</strong> <ul>\r
- <li>Jalview 2</li>\r
- </ul>\r
- <p><strong>Feedback</strong></p>\r
- <p> <img src="../help.gif" width="151" height="43"> </p>\r
- <p><br>\r
- <a href="http://www.bbsrc.ac.uk/"> <img border="0"src="../bbsrc.jpg"></a>\r
- </p></td>\r
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- <p>Key features of Jalview Version 2:\r
- <ul>\r
- <li>Remote tools implemented as web services</li>\r
- <li>Remote alignments (<a href="http://www.ebi.ac.uk/clustalw/" target="CLUSTAL">Clustal</a>, <a href="http://www.drive5.com/muscle/" target="MUSCLE">Muscle</a>...)</li>\r
- <li>Remote alignment annotation (<a href="http://www.compbio.dundee.ac.uk/~www-jpred/" target="JPRED">JPred Secondary Structure Prediction</a>)</li>\r
- <li>Printing</li>\r
- <li>PNG, HTML, Encapsulated PostScript output</li>\r
- </ul>\r
- <p>Current development allows the Jalview Application to be distributed\r
- using Java Web Start which is installed with <a href="http://www.java.com/en/download/" target="JAVA">Java.</a>\r
- Each time the application is started via Java Web Start an automatic\r
- update is performed so that you will always be running the latest code.<br>\r
- <br>\r
- N.B. if you have a local installation of Java and clicking on the link\r
- below prompts the question "Open using application...", locate\r
- your installation of Java Web Start - its called "javaws". Your web browser will now associate .jnlp\r
- files with Java Web Start<br>\r
- <br>\r
- Try it now.\r
- <center>\r
- <h2><a href="http://www.compbio.dundee.ac.uk/~andrew/JalviewWebsite/version2/webstart/JalviewX.jnlp">Start\r
- Jalview</a> </h2>\r
- <p> </p>\r
- </center>\r
- If you are having difficulties installing Java or would prefer not to\r
- use Java Web Start you could try installing Jalview from the following\r
- link.\r
- <p>\r
- <center>\r
- <h2><a target="NEW" href="Web_Installers/install.htm">Install with InstallAnywhere</a>\r
- </h2>\r
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