JAL-2403 improved ScoreModelI hierarchy as per Kira's review suggestions
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 11 Apr 2017 13:34:50 +0000 (14:34 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 11 Apr 2017 13:34:50 +0000 (14:34 +0100)
commitaba253e57b22ce7d1f4fe376935e42aeb4f6d591
tree5d23df6590543a8f66fcb57afcf4e85cbc0e5a01
parent21d7606604dab27e62ed700a39425b983901cef1
JAL-2403 improved ScoreModelI hierarchy as per Kira's review suggestions
14 files changed:
src/jalview/analysis/PCA.java
src/jalview/analysis/TreeBuilder.java
src/jalview/analysis/scoremodels/DistanceScoreModel.java [new file with mode: 0644]
src/jalview/analysis/scoremodels/FeatureDistanceModel.java
src/jalview/analysis/scoremodels/PIDModel.java
src/jalview/analysis/scoremodels/ScoreMatrix.java
src/jalview/analysis/scoremodels/SimilarityScoreModel.java [new file with mode: 0644]
src/jalview/analysis/scoremodels/SmithWatermanModel.java
src/jalview/api/analysis/DistanceScoreModelI.java [deleted file]
src/jalview/api/analysis/ScoreModelI.java
src/jalview/api/analysis/SimilarityScoreModelI.java [deleted file]
test/jalview/analysis/PCATest.java [deleted file]
test/jalview/analysis/scoremodels/FeatureDistanceModelTest.java
test/jalview/analysis/scoremodels/ScoreModelsTest.java