JAL-4418 first development release for 2.11.4.0 - release notes for

JAL-4159,JAL-4257,JAL-4386,JAL-4392,JAL-789

diff --git a/help/markdown/releases/release-2_11_4_0.md b/help/markdown/releases/release-2_11_4_0.md
new file mode 100644 (file)
index 0000000..0d4017a
--- /dev/null
+++ b/help/markdown/releases/release-2_11_4_0.md
@@ -0,0 +1,23 @@
+---
+version: 2.11.4.0
+date: 2024-06-30
+channel: "develop"
+---
+
+## New Features
+
+- <!-- JAL-4392 --> Consensus secondary structure visualization for alignments
+- <!-- JAL-4386 --> Calculate tree or PCA using secondary structure annotation
+- <!-- JAL-4159 --> Calculate PASiMap projection for sequences - ported by Thomas Morell ( U. Konstanz)
+- <!-- JAL-789,JAL-4257 --> allow adjustment of gap opening, extension, and score model for built in pairwise alignment
+
+
+### development and deployment
+
+
+## Issues Resolved
+
+
+### New Known Issues
+
+

diff --git a/help/markdown/whatsnew/whatsnew-2_11_4_0.md b/help/markdown/whatsnew/whatsnew-2_11_4_0.md
new file mode 100644 (file)
index 0000000..b04074c
--- /dev/null
+++ b/help/markdown/whatsnew/whatsnew-2_11_4_0.md
@@ -0,0 +1,5 @@
+The 2.11.4 series is the fourth in the minor-release trilogy planned for Jalview's 2.11 series. 
+
+This release adds new capabilities for consensus and clustering of protein secondary structure, along with enhanced control of the display and analysis of secondary structure from different sources of 3D structure and prediction, and also features a new implementation of the PASiMap method for sequence clustering ([Su et al. 2022 <i>Comp. Struc. Biotech.</i>](https://doi.org/10.1016/j.csbj.2022.09.034)).
+
+