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JAL-4001 Check --nousagestats before doing analytics in headless mode
[jalview.git]
/
examples
/
2023-06-01
Ben Soares
JAL-629 changes merged in from develop fixed it. Delet...
tree
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commitdiff
2023-05-02
Ben Soares
JAL-629 Changed --newframe and --allframes to --new...
tree
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commitdiff
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 deleted test output file from repo
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 DON'T use quotation marks in argfiles as they...
tree
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commitdiff
2023-04-05
Ben Soares
JAL-629 Tests for FileUtils. Tidying counter substituti...
tree
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commitdiff
2023-04-04
Ben Soares
JAL-629 More consistent printing of --arguments. Exampl...
tree
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commitdiff
2023-03-25
Ben Soares
JAL-629 improvements to argparser toString. Improvement...
tree
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commitdiff
2023-03-10
Ben Soares
JAL-629 start of tests and more examples
tree
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commitdiff
2023-02-27
Ben Soares
JAL-629 add AF examples for FER1_SPIOL. Link and displa...
tree
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commitdiff
2023-02-27
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-02-26
Ben Soares
JAL-629 PAE matrix file guesstimate from filename
tree
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commitdiff
2023-02-24
James Procter
JAL-629 JAL-4124 JAL-3855 test to check we can import...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 nf-core sample alignment files and a2m versions
tree
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commitdiff
2023-02-03
Ben Soares
JAL-629 "updated" json-simple
tree
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commitdiff
2023-01-26
Ben Soares
JAL-629 example files from nf-core
tree
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commitdiff
2023-01-11
Ben Soares
JAL-629 added Alphafold cif, pdb and PAE json files...
tree
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commitdiff
2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
tree
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commitdiff
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
tree
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commitdiff
2020-10-27
Jim Procter
update test for JAL-3763 redact shared DS sequences...
tree
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commitdiff
2020-09-22
Jim Procter
JAL-3748 test data for SplitFrameTest
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add and document ComputePeptideVariants.groovy
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-03
Jim Procter
JAL-3547 groovy script to get the conservation sequence...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3536 failing test and test data
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
tree
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commitdiff
2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
tree
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commitdiff
2019-04-26
Jim Procter
JAL-3150 examples/exampleFile.jvp for updated manual...
tree
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commitdiff
2019-03-25
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-03-25
gmungoc
JAL-3127 scripts updated for method signature change
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 more complex project test - where sequences...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 failing test for legacy projects and fixing...
tree
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commitdiff
2018-12-01
hansonr
adding jaxbtest.jvx and directing JalviewJS2.java to...
tree
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
tree
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commitdiff
2018-08-28
Jim Procter
JAL-3003 different coloured borders in demo annotation...
tree
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commitdiff
2018-08-02
Ben Soares
JAL-3053
tree
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commitdiff
2018-07-31
bsoares
Stockholm file for test
tree
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commitdiff
2018-07-02
gmungoc
JAL-3026 reinstated deleted file
tree
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commitdiff
2018-07-02
hansonr
JAL-3032 JTable work; JSUtil.jQuery object; drag-drop;
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
tree
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 example filters added
tree
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commitdiff
2017-12-01
Jim Procter
Merge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-20
Jim Procter
Merge branch 'patch/JAL-547_pid_groovyscript' into...
tree
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commitdiff
2017-10-20
Jim Procter
JAL-547 fix NPE when no selection available
tree
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commitdiff
2017-10-20
Jim Procter
JAL-547 only generate matrix for current selection...
tree
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commitdiff
2017-10-20
Jim Procter
Merge branch 'patch/JAL-547_pid_groovyscript' into...
tree
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commitdiff
2017-10-20
Jim Procter
JAL-547 updated the PID script for 2.10.x series score...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2781 example fragment with missing backbone atoms...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2781 example fragment with missing backbone atoms...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2780 example fragment with negative RESNUM
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2418 JAL-2398 JAL-2397 simpler documentation for...
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2397 JAL-2398 documentation for reinstating legacy...
tree
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commitdiff
2017-08-07
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-04
gmungoc
JAL-2500 JAL-2365 lightGray changed to lightgray for...
tree
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commitdiff
2017-08-04
gmungoc
JAL-2500 JAL-2365 lightGray changed to gray in example...
tree
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commitdiff
2017-08-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-03
gmungoc
JAL-2500 JAL-2365 feature colour "gray" _not_ "lightgra...
tree
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commitdiff
2017-08-03
gmungoc
JAL-2500 JAL-2365 lightGray changed to lightgray for...
tree
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commitdiff
2017-08-03
gmungoc
JAL-2500 JAL-2365 lightGray changed to gray in example...
tree
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commitdiff
2017-08-02
Jim Procter
Merge branch 'bug/JAL-2321' into bug/JAL-2321_merged
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-28
gmungoc
JAL-2631 make minimum colour not white
tree
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commitdiff
2017-07-28
gmungoc
JAL-2631 add graduated colour kdH features to example
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-05-25
gmungoc
JAL-2505 removed SequenceFeature constructor JAL-1641...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2546 JAL-2490 efficient lookup of features, correct...
tree
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commitdiff
2017-05-16
Jim Procter
JAL-384 - groovy scripts for conserved/unconserved...
tree
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commitdiff
2017-05-12
Jim Procter
JAL-2228 updated script in help docs, renamed docs...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 applet doc for showOccupancy parameter
tree
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commitdiff
2017-03-06
kiramt
JAL-2388 Corrected overview panel behaviour, updated...
tree
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commitdiff
2017-02-23
kiramt
JAL-2388 Unit tests in progress
tree
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commitdiff
2017-02-10
Jim Procter
Merge branch 'develop' into spike/matrix_annot
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 flag provided for 2.10.1 PCA gap calculation...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2398 include 'compatibility mode' for C->R score...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat...
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed FeatureCounterI in favour of FeatureSe...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-16
Jim Procter
JAL-2349 JAL-2382 example contact prediction in RR...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 groovy script that registers a new file format
tree
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commitdiff
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