JAL-3858 improved contactInterval computation and added detailed test coverage for...
[jalview.git] / help /
2023-09-26 James ProcterJAL-3858 JAL-4090 pae matrix docs. WIP
2023-09-25 James ProcterJAL-3858 JAL-4090 PAE documentation..
2023-09-25 James ProcterJAL-4090 fix link...
2023-09-22 James ProcterJAL-4090 smaller associate PDB file panel image in...
2023-09-21 James ProcterJAL-4090 what’s new and additional help docs for JAL...
2023-09-21 James ProcterJAL-4090 JAL-4262 JAL-4265 release notes
2023-09-21 James ProcterJAL-3858 JAL-3855 documentation for import and display...
2023-09-21 Ben SoaresJAL-4265 Use ColourUtils.parseColourString() for consis... merge/JAL-4262+JAL-4265+JAL-4269+JAL-4274+JAL-4277+JAL-4285
2023-09-20 Ben SoaresJAL-629 Explanation of \{m\} in case anyone actually...
2023-09-20 Ben SoaresJAL-629 Add link and example for BioJS image output
2023-09-20 Ben SoaresJAL-629 Make arguments appear correctly using all non...
2023-09-20 Ben SoaresJAL-629 Added/corrected/tidied documentation
2023-09-19 Ben SoaresJAL-629 JAL-4265 JAL-4269 Updated help Documentation
2023-09-19 Ben SoaresJAL-629 JAL-4265 JAL-4269 Updated help Documentation
2023-09-07 James ProcterJAL-4090 release notes for JAL-244 JAL-901 JAL-4260... merge/JAL-244+JAL-629+JAL-3416+JAL-3421+JAL-3820+JAL-3830+JAL-4001+JAL-4160+JAL-4189+JAL-4214+JAL-4242+JAL-4255_Updates_to_these_issues_branches_with_merge_conflicts_resolved-bens_stuff
2023-09-07 James ProcterJAL-4279 move on if the file doesn't exist, or Identify...
2023-09-07 James ProcterJAL-4090 JAL-4160 JAL-4274 image export dimensions...
2023-09-07 James ProcterJAL-4273 release notes for visible adjuster marks,...
2023-09-07 James ProcterJAL-4090 report JAL-4261 known issue
2023-08-28 Ben SoaresMerge branch 'develop' into merge/big_merge_of_bens_stu...
2023-08-28 James ProcterJAL-4090 JAL-4250 JAL-4253 JAL-325 release notes and...
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-3830_remove_dock_icon_in_...
2023-08-17 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t...
2023-08-17 Ben SoaresJAL-3830 JAL-4160 Remove --noheadless as --gui does...
2023-08-17 James ProcterJAL-4090 JAL-4243 bio.tools json file release notes
2023-08-10 Ben SoaresJAL-629 STDOUT documentation. Opt.STDOUT narrower...
2023-07-17 James ProcterJAL-4090 JAL-4165 known issue
2023-07-17 James ProcterJAL-4090 JAL-4165 known issue
2023-07-17 James ProcterJAL-4090 mark JAL-4178 and JAL-4142 as known issues
2023-07-07 James ProcterJAL-4090 update 2.11.3.0 release notes (with in-progres...
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
2023-06-30 James ProcterJAL-4216 release notes
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes...
2023-06-29 James ProcterJAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... improvement/JAL-4193_cl_arg_prevent_startup_file
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme...
2023-06-02 James ProcterJAL-4090 update 2.11.3.0 release notes for recent merges
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache...
2023-06-01 Ben SoaresJAL-629 better reference text for --nousagestats
2023-05-30 Ben SoaresJAL-629 JAL-4121 Added documentation to Help docs and...
2023-05-23 Ben SoaresJAL-629 Updated help docs and fixed structure image...
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting...
2023-05-18 Ben SoaresJAL-629 fixes to help docs
2023-05-17 Ben SoaresJAL-629 Changed some old -arg to --arg in help docs...
2023-05-17 Ben SoaresJAL-629 tidying the help docs
2023-05-17 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-05-17 James ProcterJAL-4184 release notes
2023-05-16 Ben SoaresJAL-629 Finished documentation for new command lines.
2023-05-15 Ben SoaresJAL-629 More help text
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher...
2023-05-12 Ben SoaresJAL-629 More docs
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT...
2023-05-11 Ben SoaresJAL-629 Move clarguments documentation to default....
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging...
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value...
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the...
2023-05-09 Ben SoaresJAL-629 more docs
2023-05-03 Ben SoaresJAL-629 a bit more documentation
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something...
2023-04-27 Ben SoaresJAL-629 start of help text
2023-02-15 James ProcterJAL-4090 move 2.11.3 series release notes to 2.11.3...
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold...
2023-01-25 James ProcterJAL-4117 - version bump and release notes for JAL-4116
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou...
2023-01-24 James ProcterJAL-4090 Release 2.11.3.0 release notes and version...
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855
2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add... Release_2_11_2_6
2023-01-23 Jim ProcterJAL-4102 whatsNew for 2.11.2.6
2023-01-20 Jim ProcterJAL-4102 update date and release notes for 2.11.2.6
2022-11-30 Jim ProcterJAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL...
2022-11-17 Ben SoaresJAL-4019 Clarification of position on 'X' in help text
2022-11-13 Ben SoaresJAL-4019 small colour fix for X in the documentation
2022-11-13 Ben SoaresJAL-4019 attribution to Suzanne
2022-11-13 Ben SoaresJAL-4019 Help pages for Nucleotide Ambiguity colour...
2022-10-29 Jim ProcterJAL-4090 bump version and set up release notes for...
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect...
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe...
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels...
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense !
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added...
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for...
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074
2022-09-16 Jim ProcterJAL-4065 release notes for JAL-4061 JAL-4062 features/JAL-4061_and_JAL-4062_findselectfeatures
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment...
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels....
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in...
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix
2022-08-08 Jim ProcterJAL-4046 release on 9th August 2022
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-3991
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-4014 - gecos colourschemes
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes...
2022-08-08 Jim ProcterJAL-4056 documented in release notes for JAL-4043
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin...
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release...
2022-07-26 Ben SoaresJAL-4036 Added text to help about different number...
2022-07-25 Ben SoaresJAL-4036 updated help about new UniProt API
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