JAL-2125 remove SHA256 digest manifest and signatures for Jmol jar
[jalview.git] / lib /
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness"
2016-04-26 Jim ProcterMerge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4 groovy/JAL-2074_upgradeto2.4.4
2016-04-26 Jim ProcterJAL-2080 removed all 'Class-Path' references in libs
2016-04-26 Jim ProcterJAL-2080 removed classpath references to Xerces and...
2016-04-25 Jim ProcterJAL-2074 removed xerces to explore wierdness
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
2016-04-25 Jim ProcterJAL-2074 add the groovy 1.8.2 library back to classpath
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2
2016-04-25 Jim ProcterJAL-2074 groovy-all didn’t get added :q
2016-04-25 Jim ProcterJAL-2074 switch to non-indy groovy to see if class...
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via...
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-22 gmungocJAL-893 upgrade to VARNAv3-93.jar
2015-06-12 Jim ProcterJAL-1766 update HTSJDK to Version 1.133
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk
2015-06-02 tcofoegbuJAL-1641 applet build fix
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in...
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-02-05 Charles Ofoegbumerge commit
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL...
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more...
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment...
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into develop
2014-10-23 unknownJAL-1521 updated xerces to 2.11 along with xml-apis
2014-10-23 Jim ProcterJAL-1521 patch is to remove xerces from classpath....
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
2014-07-22 j.procter@dundee... JAL-1333 add log4j-slf4j bridge
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working...
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into develop
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA...
2013-09-02 Jim ProcterJAL-1358 remove old v2 jaba min-client
2013-08-31 Daniel BartonBrief html documentation entry for RNAalifold under...
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices...
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient...
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation...
2013-02-13 jprocterJAL-1216 switch to official release of VARNA 3.9
2013-02-11 jprocterjson simple library
2012-12-04 jprocterJAL-1216 switch to official release of VARNA 3.9
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-06-26 jprocterJAL-899 added groovy support to develop branch
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
2012-03-30 jprocter(JAL-972) jdas latest build
2012-03-01 jprocter(JAL-893) update to VARNAv3.9-dev version
2012-03-01 jprocterrevised version of Jdas with simpler connectionProperty...
2012-02-29 jprocterupdate to latest build
2012-02-29 jprocterjdas runtime dependencies
2012-02-29 jprocterupdated build of jdas
2012-02-13 jprocter(JAL-972) updated jdas to latest version includign...
2012-02-13 jprocterremoved all dasobert code and begun to replace with...
2012-01-17 jprocterMerge branch 'JAL-1040_jar_manifest_fix' into develop
2012-01-11 jprocterremoved empty lines and fields in manifest like:
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ...
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console...
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built...
2011-11-03 jprocter(JAL-976) upgrade to jabaws-2.0 min-client library
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948)
2011-09-26 jproctertidying classpath and fixing InstallAnywhere build
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943)
2011-09-05 jprocterremoved old VARNA library
2011-08-28 janengelhardtIncluding of VARNAv-3.9;
2011-08-24 jprocternew Swing and SWT capable form layout manager - miglayout
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes
2011-02-01 jprocterfixes JAL-757
2010-12-10 jprocteradditional dependencies for httpcleint
2010-12-09 jprocterdependency for Rest client framework (JAL-715)
2010-09-22 jprocterjmol update
2010-09-15 jprocterupdate jmol
2010-09-14 jprocterstreamlined app and applet jmol console + event handlin...
2010-09-13 jprocterpatched Jmol and code for embedding JmolAppConsole...
2010-08-25 jprocterupdate to Jmol 12.1.5 (will become 12.2.X when released)
2010-08-18 jprocterupdate Jmol to 12.0.6
2010-08-18 jprocterupdate jmol instance
2010-08-11 jprocterjaba ws client revision 2680
2010-07-20 jprocterupdate to Jaba_r1 minimal client distribution, and...
2010-06-17 jprocterupdate to Jmol series 12 (JAL-582)
2010-05-14 jprocterFirst patch for * JAL-493
2010-04-23 jprocterupgrade to Vamsas client 0.2
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