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[jalview.git] / src / jalview / bin / Jalview.java

2023-03-24	Mateusz Warowny	JAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider	blob \| commitdiff
2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff \| diff to current
2022-12-13	Jim Procter	Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...	blob \| commitdiff \| diff to current
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-10-25	Ben Soares	JAL-3416 Making FlatLaF default for macs due to a probl...	blob \| commitdiff \| diff to current
2022-08-08	Jim Procter	Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...	blob \| commitdiff \| diff to current
2022-06-13	Jim Procter	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...	blob \| commitdiff \| diff to current
2022-06-13	Ben Soares	JAL-3416 remove flat as default for linux	blob \| commitdiff \| diff to current
2022-06-13	Ben Soares	JAL-3416 Added some mac specific FlatLAF settings....	blob \| commitdiff \| diff to current
2022-04-06	Ben Soares	JAL-3991 JAVA_COMPILE_VERSION put into build_properties...	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Removed code and unused widgets for defaultBrowser	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...	blob \| commitdiff \| diff to current
2022-03-07	Ben Soares	JAL-3103 Switched to (a wrapper around) BrowserLauncher2	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3814 NONEWS property	blob \| commitdiff \| diff to current
2022-02-17	Jim Procter	JAL-3959 add key retrieval urls that support CORS neede...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 read ~/.jalview_properties before initialising...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-01-28	Ben Soares	Merge branch 'develop' into JAL-3416_different_look_and...	blob \| commitdiff \| diff to current
2022-01-10	Ben Soares	JAL-3937 enable AIA download of intermediate certificat...	blob \| commitdiff \| diff to current
2022-01-10	Ben Soares	JAL-3937 enable AIA download of intermediate certificat...	blob \| commitdiff \| diff to current
2021-10-05	Ben Soares	JAL-3416 make flat default laf for linux	blob \| commitdiff \| diff to current
2021-10-04	Ben Soares	JAL-3416 updated FlatLaf to 1.6 and added some tabbed...	blob \| commitdiff \| diff to current
2021-10-04	Ben Soares	Merge branch 'develop' into JAL-3416_different_look_and...	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2021-07-25	Jim Procter	JAL-3848 add compbio and jalview to direct connection...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3812 new argument ‘-nohtmltemplates’ and user prefe...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3814 NONEWS property	blob \| commitdiff \| diff to current
2021-01-08	Ben Soares	JAL-3419 improved look of tabs	blob \| commitdiff \| diff to current
2021-01-08	Ben Soares	JAL-3416 Added FlatLightLaf, use with -Dlaf=flat property	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-12-11	Mateusz	JAL-3690 Let's enable web services (seriously this...	blob \| commitdiff \| diff to current
2020-12-08	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_J...	blob \| commitdiff \| diff to current
2020-12-07	Ben Soares	JAL-3594 added BG logo. Changed some named Jalviews...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3530 Added a -nowebservicediscovery command line...	blob \| commitdiff \| diff to current
2020-11-27	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding check...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-05	Ben Soares	JAL-3608 cherry pick of 92cb745e7	blob \| commitdiff \| diff to current
2020-10-26	Mateusz Waronwy	JAL-3690 - introduce shutdown method that cleans up...	blob \| commitdiff \| diff to current
2020-09-24	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding check...	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3750 parse protocol before checking if argument...	blob \| commitdiff \| diff to current
2020-09-14	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...	blob \| commitdiff \| diff to current
2020-08-12	Jim Procter	Merge branch 'task/JAL-3608_property_set_laf_and_tests...	blob \| commitdiff \| diff to current
2020-08-12	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-08-05	Jim Procter	Merge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...	blob \| commitdiff \| diff to current
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	blob \| commitdiff \| diff to current
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	blob \| commitdiff \| diff to current
2020-07-08	Ben Soares	Merge branch 'task/JAL-3609_HiDPI_support_in_java'...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 ex stacktraces now go to Cache.log.debug	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	blob \| commitdiff \| diff to current
2020-07-01	Ben Soares	Merge branch 'task/JAL-3608_property_set_laf_and_tests_...	blob \| commitdiff \| diff to current
2020-06-18	BobHanson	JAL-3659 unnecessary duplication -- test is made in...	blob \| commitdiff \| diff to current
2020-06-18	BobHanson	JAL-3446 unintentially left training message in code.	blob \| commitdiff \| diff to current
2020-06-17	Jim Procter	JAL-3662 JAL-3660 JAL-3561 source formatting	blob \| commitdiff \| diff to current
2020-06-17	Jim Procter	JAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat	blob \| commitdiff \| diff to current
2020-06-16	BobHanson	JAL-3659 proper headless check; skips setProperty for JS	blob \| commitdiff \| diff to current
2020-06-16	BobHanson	JAL-3662 simple fix for CLI not using right format...	blob \| commitdiff \| diff to current
2020-06-16	Ben Soares	JAL-3608 non-JS cherry-pick	blob \| commitdiff \| diff to current
2020-06-16	Jim Procter	JAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats	blob \| commitdiff \| diff to current
2020-06-16	Ben Soares	JAL-3608 formatting save only	blob \| commitdiff \| diff to current
2020-06-09	BobHanson	JAL-3446 from applet; JAL-3374	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	JAL-3446 reorganized JalviewJSApp (accidentally put...	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	reorganized JalviewJSApp (accidentally put that in...	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	JAL-3446 JavaScript interface	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	JAL-3446 removes all JalviewJSApp dependency from jalvi...	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	Refactoring of Jalview, JalviewAppLoader, JalviewApp...	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Jalview.java	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet web page embedding	blob \| commitdiff \| diff to current
2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff \| diff to current
2020-05-15	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	blob \| commitdiff \| diff to current
2020-05-04	Ben Soares	JAL-3608 streamlined LaF methods and allow specificying...	blob \| commitdiff \| diff to current
2020-05-03	Ben Soares	JAL-3608 also look at user pref PREFERRED_LAF	blob \| commitdiff \| diff to current
2020-05-01	Ben Soares	JAL-3608 Added java builtin NimbusLookAndFeel option...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Enforcing MetalLookAndFeel as default on linux...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Added 'metal' option for laf property	blob \| commitdiff \| diff to current
2020-04-23	Jim Procter	Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...	blob \| commitdiff \| diff to current
2020-04-23	soares	JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...	blob \| commitdiff \| diff to current
2020-04-22	soares	JAL-3608 saved in Eclipse with auto formatting	blob \| commitdiff \| diff to current
2020-04-22	Ben Soares	JAL-3608 Added CrossPlatform LaF and made configurable...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 Conditional reporting of Install4j and Getdown...	blob \| commitdiff \| diff to current
2019-11-22	Ben Soares	JAL-3449 install4j version, install4j template version...	blob \| commitdiff \| diff to current
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