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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
datamodel
/ SequenceI.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-05-25
James Procter
JAL-2381 copy and paste sequence also copies contact...
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commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
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commitdiff
2022-10-15
Jim Procter
JAL-2349 reusable contact map holder for SequenceI...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2021-09-17
Jim Procter
JAL-2226 new method to search for annotation matching...
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/intervalStoreJ' into merge/JAL...
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commitdiff
2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
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commitdiff
2019-02-04
hansonr
refactoring for DBMODList
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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commitdiff
2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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commitdiff
2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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commitdiff
2018-03-09
gmungoc
JAL-2839 Finder refactoring prior to fixing the defect
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
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commitdiff
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
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commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
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commitdiff
2017-11-16
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
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commitdiff
2017-11-13
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
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commitdiff
2017-11-13
gmungoc
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
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commitdiff
2017-11-07
Jim Procter
JAL-2822 JAL-2684 clarified javadoc
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commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
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commitdiff
2017-10-19
gmungoc
JAL-2755 add missing Javadoc
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-09-28
gmungoc
JAL-1796 GeneLociI as distinguished DBRefEntry
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commitdiff
2017-09-26
gmungoc
JAL-2738 promote setGeneLoci to SequenceI!
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commitdiff
2017-09-25
gmungoc
JAL-2738 getGeneLoci promoted to SequenceI
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commitdiff
2017-09-21
kiramt
JAL-2674 Rewrote propagateInsertions
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commitdiff
2017-09-14
gmungoc
JAL-2541 working Cut/Undo with feature relocation
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commitdiff
2017-09-14
gmungoc
JAL-2541 revised cut with features (work in progress)
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-06-09
gmungoc
JAL-2480 tidy javadoc
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2526sequenceCursor' into
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
features/JAL-2526sequenceCursor
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commitdiff
2017-06-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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commitdiff
2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
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commitdiff
2017-06-01
gmungoc
JAL-2526 zapCursor() renamed sequenceChanged()
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
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commitdiff
2017-05-30
gmungoc
JAL-2526 first draft of findIndex/findPosition with...
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commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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commitdiff
2017-05-29
gmungoc
JAL-2526 Sequence.findPositions to get residue position...
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commitdiff
2017-05-27
Jim Procter
JAL-2562 javadoc TODO
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
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commitdiff
2017-04-27
gmungoc
JAL-2480 don't allow null type in SequenceFeature
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commitdiff
2017-04-26
gmungoc
JAL-2490 findFeaturesAtRes with performant feature...
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commitdiff
2017-04-18
gmungoc
JAL-2480 SequenceFeaturesI encapsulates features api
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commitdiff
2017-03-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-653_JAL-1766_htslib_refseqsupport
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commitdiff
2017-03-20
gmungoc
JAL-2446 FeatureStore with NCList - work in progress
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commitdiff
2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
2016-10-03
gmungoc
JAL-2110 additional tests for setDatasetSequence, javad...
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commitdiff
2016-09-28
Jim Procter
JAL-2210 instrument setDBRefs to call ensurePrimaries
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commitdiff
2016-09-16
gmungoc
JAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
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commitdiff
2016-09-07
Jim Procter
JAL-1803 first pass at updatePDBEntry
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
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commitdiff
2016-07-12
Jim Procter
JAL-2110 javadoc
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commitdiff
2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
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commitdiff
2016-05-17
tcofoegbu
JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
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commitdiff
2016-04-05
Jim Procter
JAL-2046 explicit contract for get/set SequenceFeatures...
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commitdiff
2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
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commitdiff
2015-10-14
tcofoegbu
JAL-1926 added supporting model changes to enable savin...
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
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commitdiff
2015-06-05
Jim Procter
JAL-653 refactor sequence interface to separate concret...
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commitdiff
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
2015-02-12
Jim Procter
javadoc
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new method to get a list of insertions in...
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commitdiff
2015-01-18
Jim Procter
JAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
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commitdiff
2014-11-12
Jim Procter
javadoc
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commitdiff
2014-10-21
Jim Procter
JAL-674 JAL-1551 imports dropped during merge
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commitdiff
2014-10-21
Jim Procter
Merge branch 'features/JAL-1264_showHideAnnotations...
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commitdiff
2014-10-21
Jim Procter
JAL-1551 crlf changes
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
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