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JAL-1953 2.11.2 with Archeopteryx!
[jalview.git] / src / jalview / ext / archaeopteryx /
2022-06-03 Jim ProcterJAL-1953 2.11.2 with Archeopteryx! tree | commitdiff
2022-06-02 Jim ProcterRevert "JAL-2799 all tabs now get mouse listeners and... tree | commitdiff
2018-02-02 kjvdheideJAL-2826 added action performed for hiding collapsed... kjvdh/features/PhylogenyViewer spikes/koen tree | commitdiff
2018-02-02 kjvdheideJAL-2826 added isCollapsed boolean to tree nodes tree | commitdiff
2018-01-30 kjvdheideJAL-1953 added configuration font setters tree | commitdiff
2018-01-29 kjvdheideJAL-1953 some more comments, moved JalviewBinding tree | commitdiff
2018-01-28 kjvdheideJAL-1953 more javadoc comments tree | commitdiff
2018-01-26 kjvdheideJAL-1953 first pass of adding javadoc, some methods... tree | commitdiff
2018-01-26 kjvdheideJAL-2856 added refreshing of Aptx view when tree frame... tree | commitdiff
2018-01-25 kjvdheideJAL-2844 allow clicks outside of the tree range again... tree | commitdiff
2018-01-25 kjvdheideJAL-2844 branch colour setter improved tree | commitdiff
2018-01-24 kjvdheideJAL-2872 added setters for GUI sizes tree | commitdiff
2018-01-17 kjvdheideJAL-2794 tree viewer frame now has its binding object... tree | commitdiff
2018-01-16 kjvdheideJAL-2798 added method to tree for writing to jalview... tree | commitdiff
2018-01-12 kjvdheideJAL-2805 removed unused Aptx instance creation code tree | commitdiff
2018-01-12 kjvdheideJAL-2805 added getter and setter for jalview associatio... tree | commitdiff
2018-01-11 kjvdheideJAL-2795 simplified instance creation from calculation tree | commitdiff
2018-01-10 kjvdheideJAL-2795 calculated trees are now passed along as Newic... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 Creating jalview sequence now requires the... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 getNodeSequences returns a list now instead... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 added check for null node sequences during... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 check no longer errors if the sequence is... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 put the sequence setting in if statement ... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 added Aptx factory method reading directly... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 added nexus specific parser settings tree | commitdiff
2018-01-09 kjvdheideJAL-2805 node sequence is now immediately filled in... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 added getter in trees for retrieving all node... tree | commitdiff
2018-01-09 kjvdheideJAL-1953 moved DataConversions to Forester package tree | commitdiff
2018-01-08 kjvdheideJAL-2844 changed threshold from double to float tree | commitdiff
2018-01-08 kjvdheideJAL-2844 start on moving tree partitioning code into... tree | commitdiff
2018-01-06 kjvdheideJAL-2871 aptx Configuration now created through input... tree | commitdiff
2018-01-04 kjvdheideJAL-1953 Moved config to resources folder tree | commitdiff
2018-01-02 kjvdheideJAL-1953 start work on storing nodes in a map per tree... tree | commitdiff
2017-12-20 kjvdheideJAL-2874 made the actionlistener slightly clearer tree | commitdiff
2017-12-20 kjvdheideJAL-2838 JAL-2872 added sorting from the Aptx frame... tree | commitdiff
2017-12-20 kjvdheideJAL-281 moved utility methods to .io package tree | commitdiff
2017-12-20 kjvdheideJAL-281 split up TreeParser into separate format parsers tree | commitdiff
2017-12-18 kjvdheideJAL-1953 moved now-generic methods outside of Aptx... tree | commitdiff
2017-12-18 kjvdheideJAL-1953 -External from all interfaces names tree | commitdiff
2017-12-18 kjvdheideJAL-1953 attempt at changing Aptx's font to Jalview's tree | commitdiff
2017-12-18 kjvdheideJAL-2844 made null tree nodes return null wrappers... tree | commitdiff
2017-12-18 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' into tree | commitdiff
2017-12-18 kjvdheideJAL-1953 redundant tree interface instantiation removed tree | commitdiff
2017-12-15 kjvdheideJAL-2852 EPS saving code ported from TreePanel to Aptx. tree | commitdiff
2017-12-15 kjvdheideJAL-1953 added Y coordinate getter method tree | commitdiff
2017-12-15 kjvdheideJAL-2852 merged the EPS button adding from main branch... tree | commitdiff
2017-12-15 kjvdheideJAL-1953 node comparing now includes checking node... tree | commitdiff
2017-12-15 kjvdheideJAL-1953 removed deprecated interfaces tree | commitdiff
2017-12-15 kjvdheideJAL-2852 added EPS export button to File menu tree | commitdiff
2017-12-14 kjvdheideJAL-1953 more progress on interfaces, jalview binding... tree | commitdiff
2017-12-12 kjvdheideJAL-2874 filtering alignment now also works when just... tree | commitdiff
2017-12-12 kjvdheideJAL-2874 added filtering when a subtree is selected tree | commitdiff
2017-12-11 kjvdheideJAL-2872 hide sort button in Aptx unless it's actually... tree | commitdiff
2017-12-11 kjvdheideJAL-1953 fixed interface misnaming tree | commitdiff
2017-12-11 kjvdheideJAL-1953 start on making everything interface based tree | commitdiff
2017-12-08 kjvdheideJAL-1953 renaming of concrete implementation as well tree | commitdiff
2017-12-08 kjvdheideJAL-2844 reallow clicks to the left of the root (groups... tree | commitdiff
2017-12-07 kjvdheideJAL-2872 Redundant Aptx GUI menu items hidden, sorting... tree | commitdiff
2017-12-06 kjvdheideJAL-2794 disabled branch colors on selection for now tree | commitdiff
2017-12-06 kjvdheideJAL-2871 Added check whether configuration has been... tree | commitdiff
2017-12-05 kjvdheideJAL-2838 Sorting from the alignment view menu now funct... tree | commitdiff
2017-12-05 kjvdheideJAL-2847 Rearranging and cleaning up of database query... tree | commitdiff
2017-12-05 kjvdheideJAL-2794 associate leaves now iterates through ALL... tree | commitdiff
2017-12-05 kjvdheideJAL-2847 various error popups for db querying now have... tree | commitdiff
2017-12-05 kjvdheideJAL-2847 if pfam id is detected in first sequence its... tree | commitdiff
2017-12-05 kjvdheideJAL-2805 JAL-2847 JAL-281 added file path to Aptx frame... tree | commitdiff
2017-12-05 kjvdheideJAL-2838 tree viewer interface expanded to include... tree | commitdiff
2017-12-05 kjvdheideJAL-2838 filled in actionPerformed of the tree sort... tree | commitdiff
2017-12-05 kjvdheideJAL-2838 Aptx frames now appear in the alignment sortin... tree | commitdiff
2017-12-03 kjvdheideJAL-2847 start of cleaning up db loading code tree | commitdiff
2017-12-03 kjvdheideJAL-2844 rearranging code tree | commitdiff
2017-11-29 kjvdheideJAL-2844 check added for clicks left of root node tree | commitdiff
2017-11-29 kjvdheideJAL-2844 entirely X coord based partitioning tree | commitdiff
2017-11-29 kjvdheideJAL-2844 somewhat better repainting tree | commitdiff
2017-11-29 kjvdheideJAL-2844 temporary kludge to draw a line tree | commitdiff
2017-11-29 kjvdheideJAL-2844 added grouping to alignment panel based on... tree | commitdiff
2017-11-29 kjvdheideJAL-2844 start on colouring back onto the alignment tree | commitdiff
2017-11-29 kjvdheideJAL-2844 added colouring to partition selection tree | commitdiff
2017-11-28 kjvdheideJAL-2844 added offset to x coord to make it equal 0... tree | commitdiff
2017-11-28 kjvdheideJAL-2844 first go at partitioning, based on actual... tree | commitdiff
2017-11-27 kjvdheideJAL-2844 added selection threshold (non-adjusted calcul... tree | commitdiff
2017-11-27 kjvdheideJAL-2799 re-enabled change listener for Aptx's tabs... tree | commitdiff
2017-11-27 kjvdheideJAL-2844 line drawing at mouse click added on top of... tree | commitdiff
2017-11-26 kjvdheideJAL-2847 first rough attempt at loading in via database ID tree | commitdiff
2017-11-24 kjvdheideJAL-2799 rearranged AptxInit code tree | commitdiff
2017-11-24 kjvdheideJAL-2799 ALL trees are now loaded in as separate Aptx... tree | commitdiff
2017-11-24 kjvdheideJAL-2794 binding now exclusively supports single tab... tree | commitdiff
2017-11-24 kjvdheideJAL-2799 all tabs now get mouse listeners and Jalview... kjvdh/features/PhylogenyViewer_tabbedsupport tree | commitdiff
2017-11-24 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https... tree | commitdiff
2017-11-24 kjvdheideJAL-2838 start on sorting tree | commitdiff
2017-11-22 kjvdheideJAL-2794 reworked, everything routes via avport.sendsel... tree | commitdiff
2017-11-22 kjvdheideJAL-2794 removed several redundancies in the binding... tree | commitdiff
2017-11-22 kjvdheideJAL-2844 mouse press code rearranged to prepare for... tree | commitdiff
2017-11-22 kjvdheideJAL-2847 small things, filled in actionperformeds tree | commitdiff
2017-11-22 kjvdheideJAL-2799 fixed selections not carrying over to tabs... tree | commitdiff
2017-11-21 kjvdheideJAL-281 added string label for loading from database tree | commitdiff
2017-11-20 kjvdheideJAL-2799 JAL-2805 JAL-281 multiple trees can now be... tree | commitdiff
2017-11-20 kjvdheideJAL-281 option pane with error handling for selecting... tree | commitdiff
2017-11-17 kjvdheideJAL-2805 code refactor (actionPerformed cleaned up... tree | commitdiff
2017-11-17 kjvdheideJAL-2805 reorganized code, tree building goes through... tree | commitdiff
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