| 2005-08-22 |
amwaterhouse | Conservation colour scheme is no more |
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| 2005-08-18 |
amwaterhouse | Add name and mouse listener to new user colour menuitems |
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| 2005-08-18 |
amwaterhouse | Blosum62 PID and conservation bug fixed |
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| 2005-08-18 |
jprocter | GUI typo |
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| 2005-08-17 |
jprocter | Gui Modifications for Service Discovery. |
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| 2005-08-17 |
amwaterhouse | updateUserColourMenu |
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| 2005-08-15 |
amwaterhouse | IgnoreGapsConsensus |
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| 2005-07-29 |
amwaterhouse | Correct label for end res in copy |
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| 2005-07-18 |
amwaterhouse | Copy seq ordering bug fixed |
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| 2005-07-11 |
amwaterhouse | Must check if group.sequences are null in remove gaps |
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| 2005-07-11 |
amwaterhouse | check groupsize is non zero |
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| 2005-07-07 |
amwaterhouse | Remove all gaps must check jSize |
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| 2005-06-30 |
amwaterhouse | Formatting changes |
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| 2005-06-16 |
amwaterhouse | Sort Groups modified |
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| 2005-06-16 |
amwaterhouse | remove gaps applies to selected area |
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| 2005-06-14 |
jprocter | pad-1 gaps fixed. |
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| 2005-06-14 |
amwaterhouse | Deselect sets annotationPanel activeres null |
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| 2005-06-14 |
amwaterhouse | PaintRefresher must be sent alignment |
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| 2005-06-14 |
amwaterhouse | Returns TreePanel when opening Newick |
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| 2005-06-08 |
amwaterhouse | Recalc accelerated |
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| 2005-06-08 |
amwaterhouse | Formatted source |
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| 2005-06-08 |
amwaterhouse | GPL license added |
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| 2005-06-03 |
jprocter | Reinstated 'create tree from selected region only'... |
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| 2005-06-02 |
amwaterhouse | Name of xml file changed |
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| 2005-05-30 |
jprocter | Added clustalW 'realignment' (primitive) |
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| 2005-05-30 |
jprocter | added default ClustalWS or MuscleWS to remove gaps. |
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| 2005-05-30 |
jprocter | fixed stacktrace potential for pairwise alignment action. |
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| 2005-05-27 |
jprocter | right ordering for RedundancyPanel constructor |
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| 2005-05-27 |
jprocter | recovered changes from v 1.84 |
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| 2005-05-27 |
amwaterhouse | New cut and paste |
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| 2005-05-26 |
jprocter | fixed redundancy Undo and allowed it to work on UNALIGN... |
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| 2005-05-26 |
jprocter | bug fix in jpred client. TreeViewer display state and... |
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| 2005-05-25 |
amwaterhouse | usercolours changed |
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| 2005-05-25 |
jprocter | tidied up system.out messages and moved many to stderr. |
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| 2005-05-24 |
jprocter | Added more firePropertyChange calls - mainly for sequen... |
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| 2005-05-24 |
jprocter | added PropertyChangeListeners for alignviewport.alignme... |
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| 2005-05-24 |
amwaterhouse | setDefaultFileFormat |
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| 2005-05-23 |
jprocter | Added PadGaps and made treeSortMenu dynamic (it gets... |
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| 2005-05-23 |
amwaterhouse | new savestate method |
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| 2005-05-23 |
amwaterhouse | historyitem added |
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| 2005-05-22 |
jprocter | include MsaWS ordering but not perfect (undo destroys... |
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| 2005-05-22 |
jprocter | Added alignment ordering option to 'Sort by' and implem... |
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| 2005-05-20 |
amwaterhouse | copy order maintained |
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| 2005-05-20 |
amwaterhouse | Fasta FASTA |
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| 2005-05-19 |
amwaterhouse | loading/saving changes |
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| 2005-05-03 |
amwaterhouse | formatAdapter.formatSequences and maintain annotation... |
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| 2005-04-29 |
amwaterhouse | preferences moved to desktop |
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| 2005-04-28 |
amwaterhouse | Preferences panel added |
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| 2005-04-28 |
jprocter | added MuscleWS and did a bit more standardisation of... |
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| 2005-04-25 |
amwaterhouse | Overviewpanel allows for large alignments |
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| 2005-04-21 |
amwaterhouse | update conSlider when colour changes |
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| 2005-04-18 |
amwaterhouse | show sliders when first selecting conservation,PID |
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| 2005-04-16 |
amwaterhouse | check if colourscheme is null |
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| 2005-04-16 |
amwaterhouse | AlignPanel RefreshPanels put into paintComponent |
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| 2005-04-15 |
amwaterhouse | clustalx exception in colourchange |
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| 2005-04-15 |
amwaterhouse | PID and conservation colouring changes |
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| 2005-04-14 |
amwaterhouse | use webservice info to display web service state |
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| 2005-04-14 |
jprocter | consistent percentage gaps filter for conservation... |
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| 2005-04-13 |
amwaterhouse | treeMenuItem added, conservation sliders, finder top... |
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| 2005-04-08 |
amwaterhouse | try out spinning logo |
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| 2005-04-08 |
amwaterhouse | scale above, left right added |
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| 2005-04-07 |
amwaterhouse | no more group editor |
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| 2005-04-06 |
amwaterhouse | DONT SHOW ANNOTATIONS IF WRAPPED |
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| 2005-04-06 |
jprocter | next version of Jpred functionality using new client... |
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| 2005-04-01 |
amwaterhouse | Alignment Annotation added |
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| 2005-03-23 |
amwaterhouse | adjustForRemoveLeft / Right added |
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| 2005-03-23 |
amwaterhouse | add .fasta to save dialog |
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| 2005-03-21 |
amwaterhouse | add coloursChanging boolean |
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| 2005-03-21 |
amwaterhouse | correct eps png bug missing last 2 lines |
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| 2005-03-18 |
jprocter | various loadTree bits for loading and saving trees. |
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| 2005-03-18 |
amwaterhouse | make eps, png files, filefilter added |
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| 2005-03-17 |
amwaterhouse | view full id name optional |
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| 2005-03-16 |
amwaterhouse | uses jalviewfilechooser |
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| 2005-03-15 |
amwaterhouse | selection removed, now SelectionGroup does same job... |
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| 2005-03-10 |
amwaterhouse | search and font frames are now internalframes |
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| 2005-03-09 |
amwaterhouse | allows deletion of chars, font chooser added |
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| 2005-02-22 |
amwaterhouse | add history for cut and paste |
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| 2005-02-21 |
amwaterhouse | images moved |
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| 2005-02-18 |
amwaterhouse | treepanel is now internalframe |
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| 2005-02-16 |
amwaterhouse | Save as jpg added |
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| 2005-02-15 |
amwaterhouse | Fix bug when creating treepanel |
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| 2005-02-15 |
amwaterhouse | add applytoallgroups colouring option |
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| 2005-02-11 |
amwaterhouse | move sequences up and down |
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| 2005-02-11 |
amwaterhouse | update start and end res when copying |
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| 2005-02-10 |
amwaterhouse | Cut and paste implemented |
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| 2005-02-10 |
amwaterhouse | isAligned method added, check before making tree |
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| 2005-02-07 |
amwaterhouse | Use Cache.getProperty |
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| 2005-02-04 |
amwaterhouse | SequenceFeature display added |
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| 2005-02-02 |
amwaterhouse | Modified for wrappingAlignment |
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| 2005-02-01 |
amwaterhouse | Conservation and PID colouring methods updated |
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| 2005-01-27 |
amwaterhouse | ColourSchemeKey now in documentation |
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| 2005-01-25 |
amwaterhouse | clustalColour bug fixed, clear selection |
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| 2005-01-24 |
amwaterhouse | Clear selection when deleting all groups |
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| 2005-01-21 |
amwaterhouse | SuperGroups added |
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| 2005-01-17 |
amwaterhouse | Clustal align DNA spinner added |
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| 2005-01-17 |
amwaterhouse | Fix overviewPanel bugs |
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| 2005-01-15 |
jprocter | Implemented clustal alignment via jemboss. |
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| 2005-01-14 |
amwaterhouse | Various color bugs sorted out |
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| 2005-01-13 |
amwaterhouse | Maintain PID or conservation status when changing colour |
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| 2005-01-12 |
amwaterhouse | delete gaps bug fixed |
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git://source.jalview.org / jalview.git / history