Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / gui / Preferences.java
2024-09-13 Ben SoaresJAL-4461 Adding in a number of properties that control...
2024-05-15 Renia CorreyaJAL-4386 Added preferences for secondary structure...
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache...
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output...
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set...
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie...
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-07 Jim ProcterJAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui...
2020-12-10 gmungocJAL-1713 refactorings to allow save/restore Overview...
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with...
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving...
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
2020-01-31 gmungocJAL-2422 more responsive Chimera/X path prompts in...
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate...
2019-03-27 hansonrisJS cleanup
2019-03-15 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences...
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc...
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane...
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension...
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being...
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing...
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved...
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn...
2018-08-20 gmungocJAL-3084 force EPS output to "Text" for JalviewJS
2018-08-20 gmungocJAL-3084 hide startup file, Chimera, HTML/SVG, Web...
2018-07-17 gmungocJAL-3068 LineartOptions for EPS/HTML/SVG, new preferenc... task/JAL-3068lineartDialog
2018-07-10 gmungocJAL-3048 code reordered for JalviewJS compliance
2018-07-05 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-07-05 hansonrJAL-3026 fixes MigLayout, JSON parser
2018-07-05 gmungocJAL-3058 refactored raising JColorChooser for JS compat...
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern
2018-06-27 hansonrJAL-3032 just the changes pulled already
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO

2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-08-31 kiramtJAL-2527 Updates following code review
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
2017-08-29 kiramtJAL-2527 Added overview prefs - don't get picked up...
2017-08-28 kiramtJAL-2527 Started adding overview preferences
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 kiramtJAL-2316 Added database name column to URL links table...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-12 kiramtJAL-2316 Added GUI checks for duplicate link ids
2016-12-12 kiramtJAL-2316 Unit test update to UrlLinkTableModel and...
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-12-05 kiramtJAL-2316 Added UrlProvider factories. Tidied up labelling.
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
2016-12-02 kiramtJAL-2316 GUI updates to Connections tab in Preferences...
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