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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / gui
12 days ago Jim ProcterMerge branch 'JAL-4442_cant_quit_jalview_on_windows_11... commit | commitdiff
12 days ago Jim ProcterJAL-4418 JAL-4392 show/hide group associated secondary... commit | commitdiff
13 days ago Jim ProcterMerge branch 'patch/JAL-4392_hide_ssconsensus_if_no_dat... commit | commitdiff
13 days ago Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff
13 days ago Jim ProcterJAL-4392 autohide the secondary structure consensus... patch/JAL-4392_hide_ssconsensus_if_no_data commit | commitdiff
13 days ago Renia CorreyaJAL-4427 Added test cases and a minor correction bug/JAL-4427_HTML_code_in_sequence_ID_text commit | commitdiff
2024-09-13 Jim ProcterMerge branch 'improvement/JAL-4461_select_format_from_e... commit | commitdiff
2024-09-13 Ben SoaresJAL-4461 Tests for JalviewFileChooser.defaultSaveFileFo... commit | commitdiff
2024-09-13 Ben SoaresJAL-4461 Adding in a number of properties that control... commit | commitdiff
2024-09-12 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff
2024-09-12 Jim ProcterJAL-4461 fix up formatting and remove old comment commit | commitdiff
2024-09-12 Ben SoaresJAL-4461 Change labelling of All-known-alignment-files... commit | commitdiff
2024-09-11 Ben SoaresJAL-4460 Update currentFileFormat /after/ new format... commit | commitdiff
2024-08-30 Renia CorreyaFix for JAL-4427 commit | commitdiff
2024-08-29 Jim ProcterJAL-4446 improved reporting of progress, and transition... feature/JAL-4446_cancellable_pasimap_etal commit | commitdiff
2024-08-29 Jim ProcterJAL-4446 refactor progress listener handler code for... commit | commitdiff
2024-08-29 Jim ProcterMerge branch 'develop' into feature/JAL-4446_cancellabl... commit | commitdiff
2024-08-26 Jim ProcterJAL-4420 new drag'n'drop behaviour is now an 'Experimen... commit | commitdiff
2024-08-26 Jim ProcterJAL-4420 report exceptions raised during a drop rather... commit | commitdiff
2024-08-26 Ben SoaresJAL-4442 Removed debugging variables and a stray 'wait... JAL-4442_cant_quit_jalview_on_windows_11 commit | commitdiff
2024-08-21 Jim ProcterJAL-4442 reprioritise QuitHandler debug output to eithe... commit | commitdiff
2024-08-21 Jim ProcterJAL-4442 reprioritise JvOptionPane debug output to... commit | commitdiff
2024-08-19 Jim ProcterJAL-789 limit applicable score models to substitution... commit | commitdiff
2024-08-19 Jim ProcterJAL-4446 allow progress bar to become indeterminate... commit | commitdiff
2024-08-12 Ben SoaresJAL-4442 Add a wait for termination of button action... commit | commitdiff
2024-08-07 Jim ProcterJAL-4447 standardised title formula for reporting score... commit | commitdiff
2024-08-07 Jim ProcterJAL-4446 reuse lasteta value commit | commitdiff
2024-08-07 Jim ProcterJAL-4159 JAL-789 report pasimap and pairwise alignment... commit | commitdiff
2024-08-07 Jim ProcterJAL-4159 suppress pairwise alignment display options... commit | commitdiff
2024-08-07 Jim ProcterJAL-4446 better reporting of ETA estimation - particula... commit | commitdiff
2024-08-06 Jim ProcterJAL-4446 avoid NPE when progress bar message is null commit | commitdiff
2024-08-05 Jim ProcterJAL-4446 cancellable Pasimap - still need to make the... commit | commitdiff
2024-08-05 Jim ProcterJAL-4446 calculate and report PaSiMap ETA in progress bar commit | commitdiff
2024-08-05 Jim ProcterJAL-4446 allow progress bar message to be changed whils... commit | commitdiff
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff
2024-07-29 Jim ProcterJAL-4443 patch out pasimap in GUI for JalviewJS and... commit | commitdiff
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem... commit | commitdiff
2024-06-06 Ben SoaresJAL-4358 Add the JALVIEW: CREATED DESKTOP line to java... commit | commitdiff
2024-06-05 Ben SoaresJAL-4420 Allow associated files to be dragged on separa... commit | commitdiff
2024-06-05 Ben SoaresJAL-4409 Small refactoring of ArgParserUtils to allow... commit | commitdiff
2024-06-05 Ben SoaresMerge branch 'develop' into bug/JAL-4421_customise_volu... commit | commitdiff
2024-06-04 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche... commit | commitdiff
2024-05-27 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem... commit | commitdiff
2024-05-24 Jim ProcterJAL-4257 JAL-4159 JAL-789 tidy up passing of score... commit | commitdiff
2024-05-24 James ProcterJAL-789 pairwise alignment via calculations dialog... commit | commitdiff
2024-05-24 Jim ProcterMerge branch 'jims/feature/JAL-4159_pasimap' into featu... commit | commitdiff
2024-05-23 Jim ProcterJAL-4159 fix sense of console/alignment output suppress... commit | commitdiff
2024-05-23 Jim ProcterJAL-4159 disable the score model combo box when pasimap... commit | commitdiff
2024-05-23 MorellThomasFix PaSiMap taking scoreModels input and allow AlignSeq... commit | commitdiff
2024-05-22 MorellThomasSave PaSiMap with Jalview Session commit | commitdiff
2024-05-22 MorellThomasRectanuglar selection changed to Mouse Button 3 drag commit | commitdiff
2024-05-21 Jim ProcterJAL-4259 set title using original alignment window... spike/JAL-4159_pasimap_2114_series commit | commitdiff
2024-05-21 Jim ProcterJAL-4159 implement bounds for PASIMAP calculation ... commit | commitdiff
2024-05-21 Jim ProcterJAL-4159 PASiMap currently doesn't support different... commit | commitdiff
2024-05-21 Jim ProcterJAL-4159 sometimes the progress bar may not be availabl... commit | commitdiff
2024-05-21 Jim ProcterMerge branch 'feature/JAL-4159_pasimap' into spike... commit | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4159_pasimap commit | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... commit | commitdiff
2024-05-15 Jim ProcterJAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a... bug/JAL-4416_sview_not_shown_for_local_strucfile commit | commitdiff
2024-05-15 Jim ProcterJAL-4416 ensure the structure view is shown and any... commit | commitdiff
2024-05-15 Jim ProcterJAL-4416 make sure the structure viewer is actually... commit | commitdiff
2024-05-15 Renia CorreyaJAL-4386 Added preferences for secondary structure... commit | commitdiff
2024-05-15 Jim ProcterMerge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_... commit | commitdiff
2024-05-15 Renia CorreyaJAL-4386 - Implementation of retrieving secondary structure commit | commitdiff
2024-05-14 Ben SoaresMerge branch 'bug/JAL-4397_failing_idWidth_tests' into... commit | commitdiff
2024-05-14 Ben SoaresMerge branch 'develop' into bug/JAL-4397_failing_idWidt... bug/JAL-4397_failing_idWidth_tests commit | commitdiff
2024-05-14 Ben SoaresJAL-4414 Add a FileNotFoundException when identifying... commit | commitdiff
2024-05-13 Ben SoaresJAL-1054 Add wrappers for URL.openConnection(), URL... commit | commitdiff
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... commit | commitdiff
2024-05-13 Renia CorreyaMerge branch 'feature/JAL-4386_calculate_tree_using_sec... commit | commitdiff
2024-05-13 Renia CorreyaJAL-4386 - Implementation of substitution matrix and... commit | commitdiff
2024-05-10 Jim ProcterJAL-4411 fix typo :( commit | commitdiff
2024-05-10 Jim ProcterJAL-4411 store class of provider in PDBEntry commit | commitdiff
2024-05-01 Renia CorreyaMerge remote-tracking branch 'origin/bug/JAL-4407_no_se... commit | commitdiff
2024-05-01 Jim ProcterJAL-4407 don't transfer 'local' settings - leave as... bug/JAL-4407_no_sec_str_from_draganddrop_to_msa commit | commitdiff
2024-04-30 Renia CorreyaJAL-4392 Merging consensus secondary structure commit | commitdiff
2024-04-30 Renia CorreyaJAL-4386 Comparing secondary structure similarity direc... commit | commitdiff
2024-04-26 Renia CorreyaJAL-4386 Drop down for secondary structure sources... commit | commitdiff
2024-04-18 Ben SoaresJAL-4397 fixed testresetIdWidth() test on macos commit | commitdiff
2024-04-18 MorellThomasMerge branch 'test/progressBar' into feature/JAL-4159_p... commit | commitdiff
2024-04-18 MorellThomasImplemented ProgressBar for PaSiMap commit | commitdiff
2024-04-16 Renia CorreyaJAL-4386 Calculate tree using secondary structure annot... commit | commitdiff
2024-04-12 MorellThomasinlcude progress commit | commitdiff
2024-04-09 James ProcterJAL-4390 don't output alignment to text panel and stdou... commit | commitdiff
2024-03-15 MorellThomasAlogirthm working, but still giving slightly off results commit | commitdiff
2024-03-08 Renia CorreyaJAL-4386 Added further checks for sequences that have... commit | commitdiff
2024-03-07 MorellThomasInlcude 8 dimensions commit | commitdiff
2024-03-06 MorellThomasTest version to switch branches commit | commitdiff
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments commit | commitdiff
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... commit | commitdiff
2023-12-19 Ben SoaresJAL-4290 Fixed one test commit | commitdiff
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... commit | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff
2023-12-05 MorellThomasCleanup, note: rectangular selection works by holding... commit | commitdiff
2023-12-05 MorellThomasEnable rectangular selection for PaSiMap commit | commitdiff
2023-12-04 MorellThomasNew independent jbgui Panel for PaSiMap. Revert the... commit | commitdiff
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