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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
io
/ StructureFile.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-05-17
Ben Soares
JAL-629 Tidy up tests and replaced methods before merge...
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commitdiff
2023-05-11
Ben Soares
JAL-629 Fix --tempfac. Hide non-working --notempfac...
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commitdiff
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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commitdiff
2023-03-02
Ben Soares
JAL-629 Some refactoring to allow more flexible use...
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commitdiff
2023-01-24
James Procter
JAL-629 need to delay call to AlignFile.parse() if...
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commitdiff
2023-01-11
Ben Soares
JAL-629 refactoring TFType. Remove i18n identification...
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commitdiff
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2021-09-21
Jim Procter
JAL-3829 ignore the fake ID generated when a PDB format...
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commitdiff
2018-11-14
gmungoc
JAL-3032 don't throw Exception to signal chain not...
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commitdiff
2018-08-21
hansonr
mc_view references were MCview
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commitdiff
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-05-29
Jim Procter
JAL-2533 update javadoc
features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url
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commitdiff
2017-05-15
tcofoegbu
JAL-2533 improvement to prune off file extension when...
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commitdiff
2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
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commitdiff
2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
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commitdiff
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
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commitdiff
2016-09-07
Jim Procter
JAL-1803 JAL-1919 set type when structure file is parsed
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2016-09-04
Jim Procter
JAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade...
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
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2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling additio...
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
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2016-07-14
tcofoegbu
JAL-1919 house-keeping
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
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commitdiff
2016-06-10
tcofoegbu
JAL-1479 updated SIFTS FTP download URL, added improvem...
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2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
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2016-03-24
tcofoegbu
JAL-1919 Settings to disable duplicate generation of...
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2016-03-24
tcofoegbu
JAL-1919 Added ability to generate temprature factor...
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2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
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commitdiff
2016-03-03
tcofoegbu
JAL-1919 fixed bug causing PDBfile test failure
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2016-03-03
tcofoegbu
JAL-1919 PDBfile and JmolParser refactor
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2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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