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JAL-1807 Bob's first commit -- Applet loaded; needs image
[jalview.git] / src / jalview / io /
2015-07-21 gmungocJAL-1807 Bob's first commit -- Applet loaded; needs... j2s/develop-bh tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.io.*) tree | commitdiff
2015-07-08 gmungocJAL-1807 disambiguated method signatures with numeric... tree | commitdiff
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... tree | commitdiff
2015-07-01 tcofoegbuhouse keeping tree | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring tree | commitdiff
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor tree | commitdiff
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke... tree | commitdiff
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... tree | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 clean up tree | commitdiff
2015-06-15 tcofoegbuclean up tree | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor tree | commitdiff
2015-06-10 tcofoegbuupdated build.xml tree | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version tree | commitdiff
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in... tree | commitdiff
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments tree | commitdiff
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format... tree | commitdiff
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class tree | commitdiff
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 gff version number field tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES tree | commitdiff
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... tree | commitdiff
2015-06-04 tcofoegbuJAL-1756 bug-fix tree | commitdiff
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package tree | commitdiff
2015-05-27 tcofoegbuMerge branch 'features/JAL-1740_Decoup-BioJS' into... tree | commitdiff
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS tree | commitdiff
2015-05-25 tcofoegbubuild fix tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... tree | commitdiff
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-05-19 tcofoegbuJAL-1541 Modified BioJs exporter to take advantage... tree | commitdiff
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-12 tcofoegbuJAL_793 implemented embeding source data in exported... tree | commitdiff
2015-05-12 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-12 tcofoegbuJAL_1641 added unit test and minor house keeping tree | commitdiff
2015-05-11 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible... tree | commitdiff
2015-05-09 unknownJAL-1601 bugfix on previous commit tree | commitdiff
2015-05-09 unknownJAL-1601 patch burial display for prediction loaded... tree | commitdiff
2015-05-07 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent... tree | commitdiff
2015-03-27 tcofoegbumerge commit tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim Procterreassign features already created/documented for 2... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... tree | commitdiff
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc tree | commitdiff
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save... tree | commitdiff
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev tree | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related tree | commitdiff
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-08 Charles Ofoegbumerge commit tree | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... tree | commitdiff
2014-12-05 Charles Ofoegbumodified html css tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 merge commit tree | commitdiff
2014-12-05 Charles OfoegbuChange the Html export to utilize svg tree | commitdiff
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... tree | commitdiff
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