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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/ jbgui
12 days ago
Jim Procter
JAL-4418 JAL-4392 show/hide group associated secondary...
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2024-08-29
Jim Procter
Merge branch 'develop' into feature/JAL-4446_cancellabl...
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2024-08-26
Jim Procter
Merge branch 'bug/JAL-4398_Window_menu_font_rendering...
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2024-08-07
Jim Procter
JAL-4159 suppress pairwise alignment display options...
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2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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2024-05-16
Jim Procter
Merge branch 'develop' into feature/JAL-4159_pasimap
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2024-05-16
Jim Procter
Merge branch 'develop' into feature/JAL-4386_calculate_...
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2024-05-15
Renia Correya
JAL-4386 Added preferences for secondary structure...
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2024-05-15
Renia Correya
JAL-4386 - Implementation of retrieving secondary structure
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2024-05-13
Jim Procter
Merge branch 'develop' into features/JAL-518_justify_se...
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2024-05-13
Renia Correya
JAL-4386 - Implementation of substitution matrix and...
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2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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2024-04-29
Ben Soares
JAL-4398 Instantiate (static) JMenu windowMenu at the...
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2024-04-18
MorellThomas
Implemented ProgressBar for PaSiMap
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2024-01-23
Ben Soares
JAL-4367 Limit right and top adjustments
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2023-12-04
MorellThomas
New independent jbgui Panel for PaSiMap. Revert the...
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2023-12-04
MorellThomas
New GPCAPanel button : output pairwise alignments ...
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2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-10-19
James Procter
JAL-4307 View->Ligands submenu, implementation for...
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2023-09-16
MorellThomas
Almost working
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2023-08-18
Ben Soares
Merge branch 'improvement/JAL-4206_improve_JalviewFileC...
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2023-08-18
Ben Soares
Merge branch 'feature/JAL-244_Automatically_adjust_left...
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2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2023-07-21
Ben Soares
JAL-244 Fixed idWidth labels in headless mode for non...
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2023-06-13
Ben Soares
JAL-3416 Removed a few more JInternalFrame icons with...
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2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
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2023-05-22
James Procter
Merge branch 'JAL-1551_2_11_3_spotlett' into features...
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2023-05-20
Ben Soares
JAL-3416 Ensure setFrameIcon(null) is set for remaining...
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2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-19
James Procter
JAL-1551 spotlessApply
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2023-05-01
James Procter
JAL-4177 disable ‘Cancel’ as well - since we as yet...
features/JAL-4134_treeviewerforcolumns
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2023-05-01
James Procter
JAL-4123 JAL-3914 JAL-3858 tweak wording and layout...
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2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
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2023-02-27
Ben Soares
JAL-629 Guesstimate whether to set pLDDT with PDB file
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2023-02-26
Ben Soares
JAL-629 PAE matrix file guesstimate from filename
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2023-02-24
Ben Soares
JAL-629 Position GUI widgets for PDF file options....
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2023-02-24
Ben Soares
JAL-629 add widgets to StructureChooser for tempfac...
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2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
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2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
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2022-10-29
Ben Soares
JAL-1988 JAL-3772 removed a debugging log line
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2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
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2022-10-28
Ben Soares
JAL-1988 JAL-3772 Fixed wait between waitDialog appeara...
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2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
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2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
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2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
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2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
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2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
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2022-09-16
Jim Procter
JAL-518 refactored groovy script into main codebase...
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2022-09-16
Jim Procter
JAL-4062 copy highlighted region docs, new Alignment...
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2022-09-14
Jim Procter
JAL-4061 JAL-4062 button in Find dialog to copy highlig...
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2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
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2022-09-02
Ben Soares
JAL-1988 Added a saves in progress check for quit
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2022-08-31
Ben Soares
JAL-1988 added a saveInProgress stack to BackupFiles
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2022-07-25
Ben Soares
JAL-4034 button looks better also on other OSes with...
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2022-07-24
Ben Soares
JAL-4034 add round corners to 3DB confirmation button...
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2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
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2022-07-04
Jim Procter
JAL-4034 Fix #2 show an icon and a button to press...
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2022-06-28
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
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2022-06-28
Ben Soares
JAL-1988 Don't put Quit in the File menu if there's...
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2022-06-23
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
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2022-06-23
Ben Soares
JAL-1988 Check for setHandler capability to avoid About...
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2022-06-17
Ben Soares
JAL-3027 Avoid FlatLAF Desktop class is JalviewJS
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2022-06-15
Jim Procter
JAL-1988 JAL-3416 avoid unnecessary static flag
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2022-06-15
Jim Procter
JAL-3418 JAL-1988 don’t need java version check anymore
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2022-06-13
Ben Soares
JAL-1988 Hack to ensure Quit dialog box is moved to...
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2022-06-13
Ben Soares
JAL-1988 Moved APQHandlers to jalview.jbgui and called...
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2022-03-08
Jim Procter
JAL-3746 apply copyright to source
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2022-03-08
Ben Soares
JAL-3103 Removed code and unused widgets for defaultBrowser
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2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
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2022-03-08
Ben Soares
JAL-3103 Put jalview.jar first in getdown for .properti...
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2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
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2021-11-03
Jim Procter
JAL-3915 remove RNAview opts from preferences. Still...
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2021-10-01
Jim Procter
JAL-3616 show name of structure viewer in ‘new view...
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2021-10-01
Jim Procter
JAL-3829 fetch 3D beacons now started by clicking butto...
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2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
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2021-09-24
Jim Procter
JAL-3829 right click to view popup menu to show link...
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2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
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2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
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2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
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2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
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2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
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2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
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2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
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2021-03-19
Ben Soares
JAL-3503 missed a widget being disabled
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2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
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2021-03-05
Ben Soares
JAL-3618 Enable appBundleIsTraversable in JFileChooser...
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2020-12-11
Ben Soares
JAL-3775 JAL-3633 Make java.net.Authenticator code...
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2020-11-13
Ben Soares
JAL-3775 Eclipse re-formatting commit
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2020-11-13
Ben Soares
JAL-3633 last minute refinement so password box doesn...
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2020-11-13
Ben Soares
JAL-3633 Apply (proxy) button enabled when needed
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2020-11-13
Ben Soares
JAL-3633 Small changes to allow future fitting with...
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2020-11-13
Ben Soares
JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
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2020-11-13
Ben Soares
JAL-3633 Set proxy preferences before web calls in...
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2020-11-13
Ben Soares
JAL-3633 Memory only proxy auth password storage. Open...
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2020-11-12
Ben Soares
JAL-3633 Added Proxy Authentication credentials in...
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2020-11-12
Ben Soares
JAL-3633 Added Preferences for Proxy Authentication...
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2020-11-12
Ben Soares
JAL-3633 label.proxy_server -> label.proxy_servers
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