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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/ renderer
13 days ago
Jim Procter
JAL-4392 autohide the secondary structure consensus...
patch/JAL-4392_hide_ssconsensus_if_no_data
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2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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2024-05-15
Renia Correya
JAL-4386 Added preferences for secondary structure...
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2024-05-13
Renia Correya
JAL-4386 - Implementation of substitution matrix and...
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2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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commitdiff
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3088_finalbraceno...
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commitdiff
2023-10-23
James Procter
Merge branch 'develop' into improvement/JAL-4124_dont_d...
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2023-09-28
James Procter
JAL-3858 improved contactInterval computation and added...
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2023-09-25
James Procter
JAL-3858 minimum value for a range is used to shade...
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commitdiff
2023-09-25
James Procter
JAL-3858 javadoc and slightly revised green linear...
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commitdiff
2023-09-16
Ben Soares
JAL-4250 Fixed blue arrows in drawStemAnnot()
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2023-09-04
James Procter
JAL-3088 check for validEnd when working out whether...
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commitdiff
2023-09-04
James Procter
JAL-4250 fix location and height for RNA secondary...
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2023-09-04
James Procter
JAL-4250 rendition is way too obscure for me
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2023-09-01
James Procter
JAL-4124 matrix is saved in dataset, with forward refer...
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commitdiff
2023-08-24
Ben Soares
JAL-4250 Fix bug in vector rendition where more than...
improvement/JAL-4250_secondary_structure_annotation_antialias
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commitdiff
2023-08-24
Ben Soares
JAL-4250 Much simplified glyph creation removing most...
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2023-08-23
Ben Soares
JAL-4250 Updated jfreesvg to fix round stroke in linegraph.
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commitdiff
2023-08-23
Ben Soares
JAL-4250 Simplification of polygons and adjustments...
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2023-08-21
Ben Soares
JAL-4250 revert green to bright green
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2023-08-21
Ben Soares
JAL-4250 Conservative setting of ANTIALIAS and readjust...
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2023-08-18
Ben Soares
JAL-4250 Make secondary structure annotation shapes...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
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2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
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2023-05-22
James Procter
JAL-1551 spotless
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2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
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2023-05-12
James Procter
JAL-2349 allow PAE or other contact matrices to hold...
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2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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2023-03-24
James Procter
JAL-4158 first attempt at stashing colours for contact...
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2023-02-22
James Procter
JAL-3858 JAL-2381 allow different linear shading scheme...
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2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
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2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
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2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
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2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
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2022-10-21
Jim Procter
JAL-2349 JAL-3855 experiment masking hidden columns...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 off by one and daft return
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2022-10-20
Jim Procter
JAL-2349 avoid div-by-zero when annotation height is...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont...
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2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/column...
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2022-10-20
Jim Procter
JAL-3855 RGB colours from the alphafold paE scale.
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2022-10-19
Jim Procter
JAL-2349 JAL-4033 refactored contact matrix geom calc...
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2022-10-17
Jim Procter
JAL-2349 JAL-3855 column selection highlighting
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2022-10-15
Jim Procter
JAL-3855 2349 TODO
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2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
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2022-09-14
Jim Procter
Merge branch 'bug/JAL-3612_overviewFeatureOrdering...
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2022-06-24
Jim Procter
JAL-2349 JAL-3855 formatting
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2022-06-24
Jim Procter
JAL-4033 TODO re highlighting current column selection
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2022-06-24
Jim Procter
JAL-2349 debugged and simplified (a little) the scaled...
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2022-06-24
Jim Procter
JAL-2349 JAL-3855 resolve sequence position for contact...
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2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
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2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
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2021-09-17
Jim Procter
JAL-3079 JAL-3055 remember to reset font transform...
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2021-08-18
Jim Procter
JAL-2349 - deobfuscate the renderer and fix it .. work...
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2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
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2020-12-11
gmungoc
JAL-3612 use _last_ drawn colour per feature type in...
bug/JAL-3612_overviewFeatureOrdering
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2020-12-11
gmungoc
JAL-1713 fix typo; overview in project with open overvi...
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2020-12-10
gmungoc
JAL-1713 refactorings to allow save/restore Overview...
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2020-08-13
gmungoc
JAL-3597 additional references nulled, bug in test...
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2020-07-14
gmungoc
JAL-3597 additional references nulled, bug in test...
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2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
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2020-04-12
gmungoc
JAL-3596 change redacted
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commitdiff
2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
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2020-04-07
gmungoc
JAL-3210 fudge for JalviewJS to avoid IntervalStore...
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2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
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2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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2019-04-18
hansonr
explicit Hashtable objects
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
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2019-03-27
hansonr
isJS cleanup
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
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2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
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2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
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2019-02-21
gmungoc
JAL-3187 handle no mapping / complement features withou...
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2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
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2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
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2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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commitdiff
2019-01-25
gmungoc
JAL-3187 return a colour for linked features with trans...
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2019-01-23
gmungoc
JAL-3187 fix out by one feature on structure position
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2019-01-22
gmungoc
JAL-3187 clunky sort by renderorder in findComplementFe...
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2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
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commitdiff
2019-01-21
hansonr
minor Platform.isAMac() clean up
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2019-01-21
gmungoc
JAL-3187 draw complement features on alignment / structure
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2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
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2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
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2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
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2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
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2018-08-28
gmungoc
JAL-3055 corrected logo drawing in JS
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2018-08-28
gmungoc
JAL-3055 corrections to use of AffineTransform to scale...
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commitdiff
2018-08-27
gmungoc
JAL-3055 restore original deriveFont code for Java...
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2018-07-03
Jim Procter
JAL-2347 first pass at JAL-2347 - doesn’t quite work...
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