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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
structure
/ StructureSelectionManager.java
2023-12-15
Ben Soares
JAL-4290 Add method to allow for specific settings...
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2023-12-15
Ben Soares
JAL-4290 Set structureSelectionManager settings more...
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2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-10-03
James Procter
Merge branch 'patch/JAL-4062_sort_and_merge_contiguousr...
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2023-09-06
James Procter
JAL-629 javadoc on new setMapping variant for structure...
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commitdiff
2023-08-21
James Procter
JAL-4062 appendResult(seq,start,end) called by structur...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-05-22
James Procter
JAL-629 javadoc on StructureSelectionManager.computeMapping
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commitdiff
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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commitdiff
2023-03-02
Ben Soares
JAL-629 Some refactoring to allow more flexible use...
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commitdiff
2023-01-23
Ben Soares
JAL-629 Attempts to add PAE to structure. --headless...
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commitdiff
2022-10-26
Jim Procter
JAL-4086 quick and dirty mouseovers on ruler highlighti...
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commitdiff
2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2021-12-13
Jim Procter
JAL-3929 preserve lowercase pdbid in group name for...
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commitdiff
2021-12-08
Jim Procter
JAL-3929 don’t use the url encoded pdbId in feature...
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commitdiff
2021-11-08
Jim Procter
JAL-3855 try harder to ignore DNA/RNA only structures...
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commitdiff
2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
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commitdiff
2021-07-27
Jim Procter
JAL-3855 suppress NPE when trying to retrieve SIFTS...
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commitdiff
2020-05-29
gmungoc
Merge branch 'feature/JAL-3551Pymol' into develop
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2020-05-26
gmungoc
JAL-3624 log when SIFTS mapping fails
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2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
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commitdiff
2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
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commitdiff
2018-08-21
hansonr
mc_view references were MCview
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
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2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
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2018-04-13
gmungoc
Merge branch 'features/JAL-2944_openStructuresInSelecte...
features/JAL-2944_openStructuresInSelectedView
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2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
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commitdiff
2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
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commitdiff
2018-02-13
Jim Procter
JAL-2781 null local siftsClient variable if exception...
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor StructureSelectionManager.siftsClient...
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commitdiff
2018-02-13
Jim Procter
JAL-2781 FIXME: value of sourceType parameter always...
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor possibly non-functional ‘extract...
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commitdiff
2018-02-13
Jim Procter
JAL-2781 tidy up comments on getMapping/computeMapping
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commitdiff
2018-02-11
Jim Procter
JAL-2781 use SIFTs mapping rather than maxChain AlignSe...
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
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2017-10-24
gmungoc
JAL-2495 highlight all mapped sequences from structure...
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commitdiff
2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-27
Jim Procter
JAL-2693 TODO comments
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-09
tcofoegbu
JAL-2465 fix to dynamically specify data source type...
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2017-05-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
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2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
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2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
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commitdiff
2017-02-13
gmungoc
JAL-1632 JAL-2416 load score matrices from file, as...
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2016-12-08
gmungoc
Merge branch 'bug/JAL-2358phantomChimera' into spikes...
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2016-12-08
gmungoc
JAL-2358 ensure mappings removed on close Chimera;...
bug/JAL-2358phantomChimera
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2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
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2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
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commitdiff
2016-11-04
tcofoegbu
JAL-2195 JAL-2262 house keeping
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
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commitdiff
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
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commitdiff
2016-09-07
Jim Procter
JAL-1803 transfer mapped chain’s PDBEntry to the *datas...
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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commitdiff
2016-08-24
Jim Procter
JAL-2106 javadoc for sifts mapping method
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2016-08-24
Jim Procter
JAL-2106 prevent SIFTS mappings for sequences that...
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commitdiff
2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2016-06-15
tcofoegbu
JAL-2002 disabled 'Best Uniport Coverage' filter. JAL...
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commitdiff
2016-06-10
tcofoegbu
JAL-1479 updated SIFTS FTP download URL, added improvem...
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commitdiff
2016-06-08
tcofoegbu
JAL-1479 JAL- Fix to eradicate duplicate mapping output...
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2016-03-30
tcofoegbu
JAL-2038 bug fix for NPE while setting progress message...
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commitdiff
2016-03-24
gmungoc
JAL-2032 structure follow mouseover in a copy of a...
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
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commitdiff
2016-03-21
tcofoegbu
develop merge
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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commitdiff
2016-02-20
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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commitdiff
2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
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commitdiff
2016-02-12
gmungoc
JAL-2010 simple prototype of 'Highlight Selection'...
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commitdiff
2016-02-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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commitdiff
2016-01-29
tcofoegbu
JAL-1979 refactor out duplicated similar block of code...
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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commitdiff
2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
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