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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / structures
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide commit | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... commit | commitdiff
2023-10-17 James ProcterJAL-4089 selected columns are reported in absolute... commit | commitdiff
2023-09-20 James ProcterJAL-4265 JAL-4267 added a ‘restoreSession’ StructureVie... commit | commitdiff
2023-09-20 James ProcterJAL-4265 JAL-4267 allow injection of custom commands... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-16 James ProcterJAL-4089 - if no centerViewOn commands are given, don... commit | commitdiff
2022-10-28 Jim ProcterJAL-4089 use column selection to superpose if 4 or... commit | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which... commit | commitdiff
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers... bug/r2_11_2/JAL-3904_structureviewermenu commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2021-09-14 Jim ProcterJAL-3551 - doc tweak commit | commitdiff
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... commit | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands commit | commitdiff
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution commit | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... commit | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... commit | commitdiff
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... commit | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol commit | commitdiff
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... commit | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... commit | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment commit | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... commit | commitdiff
2020-03-16 gmungocJAL-3551 tidying, improved commands, fix Jmol model... commit | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... commit | commitdiff
2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure... commit | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... commit | commitdiff
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides commit | commitdiff
2020-02-21 gmungocJAL-2422 general pull-up/removal of common or unused... commit | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-27 Jim ProcterJAL-2691 catchall if passed dataset sequences (tests... commit | commitdiff
2017-08-27 Jim ProcterJAL-2693 TODO comments commit | commitdiff
2017-08-27 Jim ProcterJAL-2691 discover any existing chain mappings for a... commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... commit | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties commit | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-06-02 tcofoegbuJAL-2020 fix for Jmol choking jalview while loading... commit | commitdiff
2016-03-24 gmungocJAL-2032 structure follow mouseover in a copy of a... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... commit | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... commit | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... commit | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... commit | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session commit | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... commit | commitdiff