JAL-2780 JAL-2781 extra column in mapping array
[jalview.git] / src / jalview /
2018-02-12 Jim ProcterJAL-2780 JAL-2781 ahem - add a semicolon if there isn...
2018-02-11 Jim ProcterJAL-2781 use SIFTs mapping rather than maxChain AlignSe...
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between...
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping...
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure...
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre...
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings...
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore...
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock...
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to...
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures...
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI...
2018-01-18 gmungocJAL-2810 JAL-2886 i18n
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri...
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren...
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO

2017-11-30 Jim ProcterJAL-2849 fix
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling
2017-11-17 Jim ProcterJAL-2698 source code licencing
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in...
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into...
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831
2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move bug/JAL-2842
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at...
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode...
2017-11-15 kiramtJAL-2831 ported to applet
2017-11-14 kiramtJAL-2831 tidies and tests
2017-11-14 kiramtJAL-2831 tidy
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context...
2017-11-14 kiramtJAL-2811 Missed commit
2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor...
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor...
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831
2017-11-13 kiramtJAL-2811 Tidy
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into...
2017-11-13 Jim ProcterJAL-2758 remove configurable behaviour - Uniprot sequen...
2017-11-13 Jim ProcterJAL-2758 typo
2017-11-13 kiramtJAl-2811 Working for wrapped panels too
2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop
2017-11-13 gmungocJAL-2176 removed unused Sequence.index
2017-11-13 kiramtJAL-2784 new checks for gg==null bug/JAL-2784
2017-11-13 Jim ProcterJAL-2810 auto search checkbox state stored as user...
2017-11-13 gmungocJAL-2679 example accession changed to CAD01290
2017-11-13 Jim ProcterJAL-2810 mainFramTabs -> tabs
2017-11-10 Jim ProcterJAL-2828 allow CalcId to match on String equivalence... doc/JAL-2494_JAL-2828_mergefindAnnotation
2017-11-10 Jim ProcterJAL-2828 refactored duplicate code for searching lists...
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps
2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when...
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains
2017-11-07 Jim ProcterMerge branch 'imp/JAL-2775' into develop
2017-11-07 Jim ProcterJAL-2810 i18n tab label
2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters imp/JAL-2774
2017-11-07 Jim ProcterJAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher...
2017-11-07 Jim ProcterJAL-2810 working back button shown for bulk ID retrieva...
2017-11-07 kiramtJAL-2774 Fix fastpaint of wrapped alignment
2017-11-07 kiramtJAL-2821 refactored drawPartialGroupOutline bug/JAL-2821
2017-11-07 Jim ProcterJAL-2810 bulk fetch for PDB IDs
2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775 imp/JAL-2775
2017-10-31 kiramtJAL-2774 Fix repaint artefacts
2017-10-31 kiramtJAL-2774 Fixed merge issues
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-10-31 Jim ProcterJAL-2810 checkbox label for Autosearch
2017-10-31 Jim ProcterJAL-2810 default border colour
2017-10-31 kiramtJAL-2756 update for new EBI https link
2017-10-27 Jim ProcterJAL-2810 prototype retrieve ID tab for the Uniprot...
2017-10-27 Jim ProcterJAL-2804 update search results when enter pressed or...
2017-10-27 Jim ProcterJAL-2804 checkbox to enable/disable auto search (with...
2017-10-27 Jim ProcterJAL-2804 kludge method to test if last key event handle...
2017-10-27 gmungocJAL-2526 updated javadoc
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover...
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
next