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JAL-4250 Conservative setting of ANTIALIAS and readjustment of glyphs to avoid scroll...
[jalview.git]
/
src
/
jalview
/
2023-08-21
Ben Soares
JAL-4250 Conservative setting of ANTIALIAS and readjust...
tree
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commitdiff
2023-08-18
Ben Soares
JAL-4250 Make secondary structure annotation shapes...
tree
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commitdiff
2023-07-20
James Procter
JAL-3855 tree title for PAE matrix tree is PAE Matrix...
patch/JAL-3855_fixup_pae
tree
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commitdiff
2023-07-20
James Procter
JAL-3855 auto select clusters and fix up colouring...
tree
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commitdiff
2023-07-18
James Procter
JAL-3855 PAE matrices are transposed on import from...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 fix off-by-one in matrix visualisation and...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 annotation .height is bigger than graphHeight...
tree
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commitdiff
2023-07-17
James Procter
JAL-4119 TRACE level console message reporting download...
tree
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commitdiff
2023-07-12
James Procter
JAL-4223 - test and patch to ensure numbering matches...
tree
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commitdiff
2023-07-07
James Procter
JAL-4217 JAL-629 built in 25s time out waiting for...
tree
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commitdiff
2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
tree
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commitdiff
2023-07-07
James Procter
JAL-4221 update description when transferring annotatio...
tree
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commitdiff
2023-07-07
James Procter
JAL-629 even more console debug for --structureviewer...
tree
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commitdiff
2023-07-06
James Procter
JAL-629 liberal defensive coding, comments about refact...
tree
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commitdiff
2023-07-06
James Procter
JAL-629 make —structure image work again after threadin...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 catch case when the structure viewer doesn...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 interruptedExceptions should also break any...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
tree
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commitdiff
2023-07-05
James Procter
Merge branch 'patch/JAL-2292_caseSensitivePAE' into...
tree
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commitdiff
2023-07-05
James Procter
Merge branch 'patch/JAL-4213_addref_with_selection...
tree
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commitdiff
2023-07-04
James Procter
JAL-4117 JAL-1551 source licensing
tree
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commitdiff
2023-06-30
James Procter
JAL-4217 try really hard to shut down and dispose of...
tree
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commitdiff
2023-06-30
James Procter
JAL-4216 compute size of annotation using start/end...
tree
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commitdiff
2023-06-30
Ben Soares
JAL-4001 Added a random id to User-Agent to ensure...
task/JAL-4001_Plausible_API
tree
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commitdiff
2023-06-29
James Procter
JAL-4001 analytics url provided by https://jalview...
tree
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commitdiff
2023-06-28
Ben Soares
JAL-4001 change Plausible discovery URL
tree
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commitdiff
2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
tree
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commitdiff
2023-06-28
Ben Soares
JAL-4001 Remove analytics for --headless mode
tree
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commitdiff
2023-06-27
Ben Soares
JAL-4001 Added useful props information
tree
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commitdiff
2023-06-22
Ben Soares
Merge branch 'develop' into task/JAL-4001_Plausible_API
tree
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commitdiff
2023-06-22
Ben Soares
JAL-4001 Fix default API url
tree
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commitdiff
2023-06-22
James Procter
JAL-4213 don’t pass active selection when actioning...
patch/JAL-4213_addref_with_selection
tree
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commitdiff
2023-06-22
James Procter
JAL-4213 - document the addReferenceAnnotations method...
tree
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commitdiff
2023-06-22
Ben Soares
JAL-4001 Added 'installation' property.
tree
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commitdiff
2023-06-22
James Procter
JAL-2292 - ensure mapping is built for equal symbols...
patch/JAL-2292_caseSensitivePAE
tree
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commitdiff
2023-06-22
Ben Soares
JAL-4001 Added lookup to https://jalview.org/config...
tree
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commitdiff
2023-06-22
Ben Soares
JAL-4019 corrected to '>' to '>=' for percentage compar...
bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed
tree
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commitdiff
2023-06-21
James Procter
Merge branch 'patch/JAL-4196_structure_viewer_synchroni...
patch/JAL-4196_structure_viewer_synchronising
tree
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commitdiff
2023-06-21
Ben Soares
JAL-4001 Rationalise user-agent string into HttpUtils
tree
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commitdiff
2023-06-21
Ben Soares
JAL-4001 Change wording from google to plausible or...
tree
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commitdiff
2023-06-20
Ben Soares
JAL-4001 rename the init method
tree
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commitdiff
2023-06-20
Ben Soares
JAL-4001 Working Plausible analytics
tree
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commitdiff
2023-06-20
Ben Soares
JAL-4001 Plausible class
tree
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commitdiff
2023-06-20
Ben Soares
JAL-4001 Added a genuine client_id (from gtag). Added...
task/JAL-4001_migrate_googleanalytics_to_GA4
tree
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commitdiff
2023-06-17
Ben Soares
JAL-4001 Check --nousagestats before doing analytics...
tree
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commitdiff
2023-06-16
Ben Soares
JAL-4001 Add a _geo=1 to query string and JSON. Add...
tree
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commitdiff
2023-06-16
Ben Soares
JAL-4001 Remove jgoogleanalytics code and jar
tree
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commitdiff
2023-06-16
Ben Soares
JAL-4001 make page_location the same encoding as the...
tree
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commitdiff
2023-06-15
Ben Soares
JAL-4001 Changed for Java 8 compatibility
tree
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commitdiff
2023-06-14
Ben Soares
JAL-4001 Trying to see extra information in GA dashboard
tree
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commitdiff
2023-06-14
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-09
Ben Soares
JAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
tree
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commitdiff
2023-06-09
Ben Soares
JAL-3599 Deliberate NPE to see if build plan fails
tree
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commitdiff
2023-06-08
Ben Soares
JAL-3599 gradle tasks to test JalviewJS launches in...
tree
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commitdiff
2023-06-08
Ben Soares
JAL-4001 Only send defaultParams for application_launch...
tree
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commitdiff
2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-08
James Procter
Merge branch 'develop' into patch/JAL-4196_structure_vi...
tree
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commitdiff
2023-06-08
James Procter
JAL-4196 make very sure we avoid CME by defensively...
tree
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commitdiff
2023-06-08
James Procter
JAL-4196 report an error if structure view doesn’t...
tree
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commitdiff
2023-06-08
James Procter
JAL-4196 structure view cli tests wait using new jalvie...
tree
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commitdiff
2023-06-08
Ben Soares
JAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...
tree
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commitdiff
2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-07
Ben Soares
JAL-4001 Javadoc for the method to use
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
tree
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commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 catch thrown exceptions (if any) during image...
tree
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commitdiff
2023-06-07
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-07
Ben Soares
JAL-4001 Added more params for application_launch
tree
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commitdiff
2023-06-07
Ben Soares
JAL-4001 removed a test param
tree
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commitdiff
2023-06-07
Ben Soares
JAL-4001 GA4 tracking is now ENABLED. Currently loggin...
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 tidy up desktop instances after creating them
tree
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commitdiff
2023-06-06
James Procter
JAL-4195 report full stack trace for exceptions raised...
tree
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commitdiff
2023-06-06
James Procter
JAL-4160 --colour can now take user defined scheme...
tree
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commitdiff
2023-06-06
James Procter
JAL-4160 JAL-4195 wait around until alignFrame calculat...
tree
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commitdiff
2023-06-06
James Procter
JAL-1551 formatting and javadoc for ArgParser rather...
tree
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commitdiff
2023-06-06
James Procter
JAL-629 - remove TODO from jalview.bin.Jalview since...
tree
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commitdiff
2023-06-06
James Procter
JAL-4195 Debug message indicating creation of an image...
tree
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commitdiff
2023-06-06
James Procter
JAL-1551 a bit of javadoc for Jalview.testoutput methods
tree
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commitdiff
2023-06-05
Ben Soares
JAL-4001 debugging statements
tree
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commitdiff
2023-06-05
Ben Soares
JAL-4001 untested GA4 client code
tree
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commitdiff
2023-06-05
Ben Soares
JAL-4001 most of google analytics client
tree
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commitdiff
2023-06-05
Ben Soares
JAL-4001 start of GA4 client class
tree
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commitdiff
2023-06-02
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
tree
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commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-4001 Changed title+message to MessageManager
tree
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commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
tree
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commitdiff
2023-06-01
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-06-01
James Procter
JAL-4134 properly resolve positions in associated align...
features/JAL-4134_use_annotation_row_for_colours_and_groups
tree
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commitdiff
2023-05-30
James Procter
JAL-4134 repaint the tree or alignment view(s) when...
tree
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commitdiff
2023-05-30
James Procter
JAL-4134 highlight selected column nodes on the linked...
tree
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commitdiff
2023-05-30
Ben Soares
JAL-629 JAL-4121 Added documentation to Help docs and...
tree
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commitdiff
2023-05-30
Ben Soares
JAL-629 Better formatting of Arg.Opt options in usage...
tree
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commitdiff
2023-05-30
Ben Soares
JAL-4121 slight refactoring of method name and added...
tree
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commitdiff
2023-05-29
James Procter
JAL-4190 - escape clears selected nodes
tree
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commitdiff
2023-05-29
James Procter
JAL-4134 JAL-2349 test & fixed implementation(ish)...
tree
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commitdiff
2023-05-29
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
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