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JAL-3091 release notes for JAL-3104
[jalview.git] / src / jalview /
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db... tree | commitdiff
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge tree | commitdiff
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) tree | commitdiff
2018-03-08 gmungocJAL-2885 tests updated for code changes tree | commitdiff
2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation... tree | commitdiff
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10... tree | commitdiff
2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table bugs/JAL-2922 tree | commitdiff
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10... tree | commitdiff
2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection tree | commitdiff
2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases... tree | commitdiff
2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence... tree | commitdiff
2018-03-07 gmungocJAL-2925 handle empty annotation when copying group... tree | commitdiff
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width... tree | commitdiff
2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions bug/JAL-2924nullTooltip tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-27 Jim Procterfix for JAL-2922 - update states all at once and then... tree | commitdiff
2018-02-26 Jim ProcterJAL-2920 parse variation and original elements of the... tree | commitdiff
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea... tree | commitdiff
2018-02-23 Jim ProcterJAL-2885 xfam https features/JAL-2885UniprotHttps tree | commitdiff
2018-02-23 Jim ProcterJAL-2885 XFAM_DOMAIN->XFAM_BASEURL tree | commitdiff
2018-02-23 Jim ProcterJAL-2885 Ensembl* -> https tree | commitdiff
2018-02-23 Jim ProcterJAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL tree | commitdiff
2018-02-23 Jim ProcterJAL-2885 renamed base URL getter from getDomain.. tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-984 ID width adjuster needs to be white ! tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-984 remove all references to idwidth.gif and use... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-294 remove unneeded paint() method tree | commitdiff
2018-02-22 Jim ProcterJAL-984 remove commented/unnecessary if clause tree | commitdiff
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_... tree | commitdiff
2018-02-21 Jim ProcterJAL-2778 reinstate transparent windows to avoid ugly... bug/JAL-2778again tree | commitdiff
2018-02-21 kiramtJAL-2778 Adjust cursor changes in overview panel tree | commitdiff
2018-02-21 kiramtJAL-2778 Revert back to old synchronisation tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 JAL-2781 don’t create a mapping if sequence... tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 JAL-2781 only create a mapping entry or write... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 JAL-2780 include sequence start number when... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 null local siftsClient variable if exception... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor StructureSelectionManager.siftsClient... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 FIXME: value of sourceType parameter always... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor possibly non-functional ‘extract... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 tidy up comments on getMapping/computeMapping tree | commitdiff
2018-02-12 Jim ProcterJAL-2780 JAL-2781 ahem - add a semicolon if there isn... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 use SIFTs mapping rather than maxChain AlignSe... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... tree | commitdiff
2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS... bug/JAL-2666 tree | commitdiff
2018-02-09 gmungocJAL-2789 code format changes only (before functional... tree | commitdiff
2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1 tree | commitdiff
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre... tree | commitdiff
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings... tree | commitdiff
2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... tree | commitdiff
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests... tree | commitdiff
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator tree | commitdiff
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review tree | commitdiff
2018-02-05 kiramtJAL-2788 possible adjustments to sequence accesses tree | commitdiff
2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates bug/JAL-2899 tree | commitdiff
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotatio... tree | commitdiff
2018-02-02 gmungocJAL-984 better behaved panel height adjuster tree | commitdiff
2018-02-01 gmungocJAL-2899 update structure and overview on slider drag... tree | commitdiff
2018-02-01 kiramtJAL-2759 Added in JAL-2851 fix tree | commitdiff
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator tree | commitdiff
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... tree | commitdiff
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming tree | commitdiff
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets tree | commitdiff
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check tree | commitdiff
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed tree | commitdiff
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... tree | commitdiff
2018-01-30 kiramtJAL-2759 comment tree | commitdiff
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... tree | commitdiff
2018-01-30 kiramtJAL-2759 Keep numColumns up to date tree | commitdiff
2018-01-29 kiramtJAL-2759 remove unneeded cast tree | commitdiff
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... tree | commitdiff
2018-01-29 kiramtJAL-2759 numColumns reset tree | commitdiff
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear() tree | commitdiff
2018-01-29 kiramtJAL-2759 Tidy tree | commitdiff
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... tree | commitdiff
2018-01-29 kiramtJAL-2759 Fix unintended type change tree | commitdiff
2018-01-26 kiramtJAL-2778 try another way to draw sequences with reduced... tree | commitdiff
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims tree | commitdiff
2018-01-25 kiramtJAL-2778 Tidy tree | commitdiff
2018-01-25 kiramtJAL-2778 added JAL-2851 fix to avoid confusion tree | commitdiff
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster tree | commitdiff
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... tree | commitdiff
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... tree | commitdiff
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... tree | commitdiff
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