JAL-2361 simplify constructors, select unsaved but applied user defined
[jalview.git] / src /
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461
2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-03-30 gmungocJAL-2401 code and help tidy for review comments
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-03-24 kiramtJAL-2314 Tidy up
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 kiramtJAL-2314 Tidies
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence...
2017-03-21 gmungocJAL-2243 update discovered features on opening structur...
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into...
2017-03-20 kiramtJAL-2388 Comment typo
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute...
2017-03-16 Jim ProcterJAL-1933 refactor parameter for code clarity
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-16 kiramtJAL-2388 Applet update for overview panel
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split...
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-15 gmungocJAL-2438 corrected getFeatureRenderer()
2017-03-15 gmungocJAL-2442 applet feature transparency also on overview...
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed'
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat...
2017-03-15 gmungocMerge branch 'develop' into bug/JAL-2436featureRenderer...
2017-03-14 kiramtJAL-2388 Working overview panel
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support...
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates
2017-03-14 gmungocJAL-2438 Javadoc updates
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies
2017-03-13 gmungocJAL-2438 corrected handling of default colour
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding...
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie...
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are...
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-07 kiramtJAL-2388 Additional unit tests
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio...
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden...
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when...
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-27 kiramtJAL-2388 Minor refactoring
2017-02-23 kiramtJAL-2388 Unit tests in progress
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-21 kiramtJAL-2421 Unit test
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop
2017-02-17 kiramtJAL-2388 Incomplete unit tests
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and...
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to...
2017-02-15 Jim ProcterJAL-2374 new contains methods for seq and seq,apos
2017-02-15 Jim ProcterJAL-2374 javadoc - qualify that sequence argument to...
2017-02-14 gmungocJAL-2346 disable 'threshold min/max' when 'use original...
2017-02-14 gmungocJAL-2346 remove refactored fields, fix test for above...
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-02-10 gmungocJAL-2371 small move of code, typo correction
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