IgnoreGapsConsensus
[jalview.git] / src /
2005-08-15 amwaterhouseIgnoreGapsConsensus
2005-08-15 amwaterhouseDont color Checking... red
2005-08-15 amwaterhouseDeclare variables outside loops
2005-08-15 amwaterhouseCalculate gap and nogap ratio here
2005-08-12 jprocterfixed leafMapping bug for Id's like SequenceX (where...
2005-08-09 amwaterhouseCache.getDefault
2005-08-09 amwaterhouseProxy server, default browser, multiple links added
2005-08-09 amwaterhousecache.getDefault
2005-08-09 amwaterhouseTry/catch loading default icons
2005-08-09 amwaterhouseSplash screen is repainted when checking latest version
2005-08-09 amwaterhouseHandle multiple url links
2005-08-09 amwaterhouseCan give a name to new browser window
2005-08-09 amwaterhouseProperties file is used in preference to viewport/cache...
2005-08-09 amwaterhouseEdit/add/delete a sequence link
2005-08-09 amwaterhouseApplet handles multiple sequence links
2005-08-03 amwaterhouseFix for user entering number in search window
2005-08-03 amwaterhouseVersion 2.02
2005-08-03 amwaterhouse1 & -1
2005-08-03 amwaterhouseTrees aren't save in headless state in this version
2005-08-03 amwaterhouseLoading thread moved to io.FileLoader
2005-08-03 amwaterhouseUse Container to get fontMetrics
2005-08-03 amwaterhouseFileLoading removed from desktop
2005-08-03 amwaterhouseCan run headless=true
2005-08-02 amwaterhouseUse font.getName, not font.getFontName
2005-07-29 amwaterhouseRemove ref to ServletGUI
2005-07-29 amwaterhouseuse 1 & -1 if start/end not specified
2005-07-29 amwaterhouseif endRes <1, calc the endRes
2005-07-29 amwaterhouseCorrect label for end res in copy
2005-07-18 amwaterhouseCopy seq ordering bug fixed
2005-07-11 amwaterhouseVersion changes
2005-07-11 amwaterhouseMust check if group.sequences are null in remove gaps
2005-07-11 amwaterhouseConsume if enter pressed
2005-07-11 amwaterhouseListen for return key
2005-07-11 amwaterhousecheck groupsize is non zero
2005-07-11 amwaterhousesetIconImage
2005-07-11 amwaterhouseAdd test case if code version not found
2005-07-11 amwaterhouseVersion changes
2005-07-11 amwaterhousethis.installIcons
2005-07-11 amwaterhouseRelease and build date methods changed
2005-07-07 amwaterhouseRuns if no files to open and -nodisplay is not used
2005-07-07 amwaterhousepress del to cut
2005-07-07 amwaterhousedelete markers from start to end
2005-07-07 amwaterhouseRemove all gaps must check jSize
2005-07-06 amwaterhouseRemove group if sequences are null
2005-07-06 amwaterhouseHelp file url changed
2005-07-06 amwaterhousedont add null group
2005-07-06 amwaterhouseSequence to Uppercase before checksum
2005-06-30 amwaterhouseFormatting changes
2005-06-30 amwaterhouseNot used in Jalview
2005-06-16 jprocterrenamed menu for jPred to Jnet.
2005-06-16 jprocterbetter clustalw reference
2005-06-16 amwaterhousedont add sequence twice to new group
2005-06-16 amwaterhouseSort Groups modified
2005-06-16 amwaterhousedont convert to uppercase
2005-06-16 amwaterhousetextarea replaces textfield - can cut and paste sequenc...
2005-06-16 amwaterhouseremove gaps applies to selected area
2005-06-15 amwaterhouseuse .jalview.uniprot.xml
2005-06-15 amwaterhouseCheck colours not null
2005-06-15 amwaterhousecheck colourscheme is not null
2005-06-15 amwaterhousepaintrefresher
2005-06-15 amwaterhouseadd/remove updated
2005-06-15 amwaterhouseColumn selection changed
2005-06-15 amwaterhouseREmove commented out lines
2005-06-15 amwaterhouseallow for fastpaint
2005-06-15 amwaterhouseadd / remove editable columns
2005-06-15 amwaterhouseTooltip changed
2005-06-14 amwaterhousechange name of uniprot file
2005-06-14 amwaterhouseadd version
2005-06-14 amwaterhouseremove system.out
2005-06-14 jprocterpad-1 gaps fixed.
2005-06-14 jprocterslight modification to srs query so it takes both unipr...
2005-06-14 jprocterArbitrary decision to keep friendly id name when readin...
2005-06-14 amwaterhouseupdate conservation colours after edit
2005-06-14 amwaterhouseToolTip updated
2005-06-14 amwaterhouseadd value to conservation mouseover
2005-06-14 amwaterhouseif seq is null, dont check pdb
2005-06-14 amwaterhousemouse pressed moved to mouseclicked
2005-06-14 amwaterhouseDeselect sets annotationPanel activeres null
2005-06-14 amwaterhousereset if clustalX colouring
2005-06-14 amwaterhouseDont delete nextSeq
2005-06-14 amwaterhousePaintRefresher must be sent alignment
2005-06-14 amwaterhousesuper.paintComponent
2005-06-14 amwaterhouseSet background colour of applet RGB
2005-06-14 amwaterhouseprotected now public
2005-06-14 amwaterhouseDouble click to launch file browser
2005-06-14 amwaterhousetooltips instant (hopefully)
2005-06-14 amwaterhouseNo spaces allowed in sequence name
2005-06-14 amwaterhouseLoad/Save trees
2005-06-14 amwaterhouseReturns TreePanel when opening Newick
2005-06-14 amwaterhouseSaves trees
2005-06-13 jprocternull pointer fix.
2005-06-13 amwaterhouseuses paintrefresher
2005-06-13 amwaterhouseclustal probs
2005-06-13 amwaterhousequit saves screen size
2005-06-13 amwaterhouseUpdates checkboxes on load
2005-06-13 amwaterhousePaintRefresh changed
2005-06-13 amwaterhouseprotected now public
2005-06-13 amwaterhouseQuit actionPerformed
2005-06-13 amwaterhouseGet colourScheme with seqs and width
2005-06-10 amwaterhouseSeqFetcher modified
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