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JAL-2349 fixed rendering method and switched to using color from contact range to...
[jalview.git] / src /
2016-12-12 Jim ProcterJAL-2349 fixed rendering method and switched to using... tree | commitdiff
2016-12-12 Jim ProcterJAL-2349 method to get display colour to represent... tree | commitdiff
2016-12-12 Jim ProcterJAL-2349 method to get contact intensity for given... tree | commitdiff
2016-12-05 Jim ProcterJAL-2349 contact map interface todo tree | commitdiff
2016-12-05 Jim ProcterJAL-2349 tidying tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 make debug message reporting renderer used... tree | commitdiff
2016-12-04 Jim ProcterJAL-2349 contact renderer prototype (that doesn’t hang!) tree | commitdiff
2016-12-04 Jim ProcterJAL-2349 add dummy contact for both applet and application tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 JAL-2349 make contact maps non-editable so... tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 adjustable height for any non-label render... tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 JAL-2349 refactored contact map renderer and... tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 contact map renderer refactored from hacked... tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 row renderer factory interface tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 row renderer interface tree | commitdiff
2016-12-04 Jim ProcterJAL-2349 dummy contact matrix annotation row tree | commitdiff
2016-12-04 Jim ProcterJAL-2349 interfaces and logic for adding contact matric... tree | commitdiff
2016-12-04 Jim ProcterJAL-2348 custom renderer type tree | commitdiff
2016-12-02 Jim Procterbasic hack to get (almost) equal height density plot tree | commitdiff
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... tree | commitdiff
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor... tree | commitdiff
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI tree | commitdiff
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile() tree | commitdiff
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path tree | commitdiff
2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView tree | commitdiff
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects tree | commitdiff
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 applied BSD license for chimera/StrucViz2... tree | commitdiff
2016-11-24 gmungocFurther tweaks to get tests passing tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added layer of abstraction between Jalview... tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to... tree | commitdiff
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... tree | commitdiff
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped tree | commitdiff
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... tree | commitdiff
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... tree | commitdiff
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... tree | commitdiff
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... tree | commitdiff
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory tree | commitdiff
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... tree | commitdiff
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... tree | commitdiff
2016-11-17 gmungocJAL-2327 add isContactFeature tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... tree | commitdiff
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... tree | commitdiff
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... tree | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction tree | commitdiff
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera... tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... tree | commitdiff
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2282 Better check for existing url links tree | commitdiff
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! tree | commitdiff
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet tree | commitdiff
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... tree | commitdiff
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... tree | commitdiff
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code... tree | commitdiff
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