JAL-3187 i18n for titles in windows/tabs
[jalview.git] / src /
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se...
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment...
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript
2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
2019-06-07 gmungocJAL-3187 change fields to local variables
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF...
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from...
2019-06-06 gmungocMerge branch 'develop' into trialMerge
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just...
2019-05-29 gmungocJAL-2738 error logging if no ##reference found
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove...
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into...
2019-05-27 Ben SoaresJAL-3141 Object array cast missing
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips...
2019-05-25 Ben SoaresJAL-3141 One more error log fix
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi...
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames...
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS...
2019-05-06 gmungocJAL-3239 release note
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp...
2019-05-06 gmungocJAL-3244 delete obsolete method
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil...
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-04-26 gmungocJAL-2743 class Javadoc
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci...
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition...
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition"
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition'
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change...
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection...
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL"
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence...
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves...
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
2019-04-10 gmungocJAL-3018 REST version updated to 10.0
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG...
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -...
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop
2019-03-27 gmungocJAL-2620 improved error reporting on failure to load...
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned...
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout()
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ...
2019-03-22 gmungocJAL-1889 more debug logging
2019-03-21 gmungocJAL-1889 better debug logging
2019-03-21 gmungocJAL-1889 temporary debug in findColumn()
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with...
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-20 Ben SoaresJAL-3141 Disabled the 'Include Backup Files' checkbox...
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug
2019-03-19 Ben SoaresJAL-3141 Removed 'Save Project' File Menu item
2019-03-19 Ben SoaresJAL-3141 patch for Backups preferences enable/disable...
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules...
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all...
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in...
2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-12 gmungocJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into...
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored
2019-03-11 gmungocMerge branch 'bug/JAL-3075' into develop
2019-03-08 gmungocJAL-3193 defensive trim of URL read from properties...
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