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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
test
/
jalview
/
analysis
/
scoremodels
/ ScoreMatrixTest.java
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
feature/JAL-3205symmetricCalc
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2019-03-04
gmungoc
JAL-3205 worked examples in unit test for symmetric...
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2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
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2017-03-29
gmungoc
JAL-2416 revert to '*' not '-' in score matrix, handle...
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2017-03-28
gmungoc
JAL-2403 JAL-2416 pairwise score unexpected symbols...
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2017-03-28
gmungoc
JAL-2403 further test coverage for ScoreMatrix, min...
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2017-03-27
gmungoc
JAL-2416 score matrix gap symbol (if any) dynamically...
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2017-03-27
gmungoc
JAL-2416 use '-' not space for gap in score matrices
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2017-03-24
gmungoc
JAL-2416 tests added for ScoreMatrix
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2017-02-28
gmungoc
JAL-1632 'includeGaps' applied to FeatureDistanceModel...
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2017-02-27
gmungoc
JAL-838 ScoreMatrix now respects SimilarityParams!
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2017-02-24
gmungoc
JAL-838 added 'SeqSpace' PID mode, added parameters...
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2017-02-23
gmungoc
JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
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2017-02-21
gmungoc
JAL-2416 typo
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2017-02-21
gmungoc
JAL-2416 ScoreMatrix.getMatrix() returns a defensive...
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2017-02-21
gmungoc
JAL-2416 support roundtrip print/parse of ScoreMatrix
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2017-02-21
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-02-21
gmungoc
JAL-2416 more validation in ScoreMatrix constructor
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2017-02-20
gmungoc
JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
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2017-02-14
gmungoc
Parsing moved to (new) ScoreMatrixFile, drag and drop...
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2017-02-13
gmungoc
JAL-2416 allow alphabet symbol (optional) in first...
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2017-02-13
gmungoc
JAL-1632 JAL-2416 load score matrices from file, as...
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