2023-11-03 |
James Procter | JAL-4090 JAL-1551 spotlessApply |
commit | commitdiff |
2023-07-07 |
James Procter | JAL-4221 update description when transferring annotatio... |
commit | commitdiff |
2023-05-25 |
James Procter | JAL-2381 copy and paste sequence also copies contact... |
commit | commitdiff |
2022-11-14 |
Ben Soares | JAL-4019 Put original test back |
commit | commitdiff |
2022-11-13 |
Ben Soares | JAL-4019 Added tests for new Nucleotide sequence detection |
commit | commitdiff |
2022-03-08 |
Jim Procter | JAL-3438 spotless for 2.11.2.0 |
commit | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
commit | commitdiff |
2021-09-21 |
Jim Procter | JAL-3829 ignore the fake ID generated when a PDB format... |
commit | commitdiff |
2021-09-17 |
Jim Procter | JAL-2226 new method to search for annotation matching... |
commit | commitdiff |
2021-09-16 |
Jim Procter | JAL-3794 new test for recognition of protein or DNA... |
commit | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 promote non-canonical version of dbref to... |
commit | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 passing test to verify a uniprot accession... |
commit | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
commit | commitdiff |
2019-06-10 |
gmungoc | JAL-3296 ensure sequence cursor reset when sequence... bug/JAL-3296changeStartInvalidateCursor |
commit | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
commit | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'feature/intervalStoreJ' into merge/JAL... |
commit | commitdiff |
2019-03-01 |
gmungoc | JAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ |
commit | commitdiff |
2019-02-04 |
hansonr | Test suite try/catch reverted |
commit | commitdiff |
2019-01-29 |
hansonr | test package fix for List<DBRefEntry> DBrefs (untested) |
commit | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
commit | commitdiff |
2018-11-29 |
gmungoc | JAL-3140 NCList now via IntervalStore library |
commit | commitdiff |
2018-05-11 |
gmungoc | JAL-2986 additional asserts for SequenceCursor updates |
commit | commitdiff |
2018-05-11 |
gmungoc | JAL-2986 failing test added |
commit | commitdiff |
2018-01-22 |
kiramt | JAL-2579 Moved locateVisibleStartOfSequence to Sequence... |
commit | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
commit | commitdiff |
2017-11-21 |
kiramt | Merge branch 'develop' into feature/JAL-2759 |
commit | commitdiff |
2017-11-13 |
gmungoc | Merge branch 'bug/JAL-2829deleteCharsWithGaps' into |
commit | commitdiff |
2017-11-10 |
gmungoc | JAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps |
commit | commitdiff |
2017-11-10 |
gmungoc | JAL-2829 unit tests for failing cases |
commit | commitdiff |
2017-11-08 |
kiramt | Merge branch 'develop' into feature/JAL-2759 |
commit | commitdiff |
2017-11-06 |
Jim Procter | Merge branch 'bug/JAL-2541cutRelocateFeatures' into... |
commit | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
commit | commitdiff |
2017-10-23 |
Jim Procter | Merge branch 'bug/JAL-2682parseId' into develop |
commit | commitdiff |
2017-10-11 |
gmungoc | JAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds |
commit | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
commit | commitdiff |
2017-09-21 |
kiramt | JAL-2674 unit test for gapBitSet |
commit | commitdiff |
2017-09-14 |
gmungoc | JAL-2541 length check in deleteChars (redoing lost... |
commit | commitdiff |
2017-09-14 |
gmungoc | JAL-2541 working Cut/Undo with feature relocation |
commit | commitdiff |
2017-08-23 |
gmungoc | JAL-2481 a smidgin more test coverage of findFeatures |
commit | commitdiff |
2017-08-23 |
gmungoc | JAL-2682 non-regex sequence id parsing, and tests added |
commit | commitdiff |
2017-06-24 |
gmungoc | JAL-2547 fix case of gap followed by enclosing contact... |
commit | commitdiff |
2017-06-22 |
gmungoc | JAL-2481 JAL-2593 JAL-2526 further optimisation of... |
commit | commitdiff |
2017-06-21 |
gmungoc | JAL-2480 tidy generic initialisations, SequenceFeatures... |
commit | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
commit | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
commit | commitdiff |
2017-06-08 |
gmungoc | JAL-2526 correct boundary conditions for sequence left... |
commit | commitdiff |
2017-06-08 |
gmungoc | JAL-2526 cache first/last residue column positions... |
commit | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2526sequenceCursor' into |
commit | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into |
commit | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor |
commit | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
commit | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 fixed broken asserts for SequenceI.getInsertio... |
commit | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 SequenceI.getInsertionsAsBits for convenient... |
commit | commitdiff |
2017-06-02 |
gmungoc | JAL-2526 additional tests for findPosition with/without... |
commit | commitdiff |
2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
commit | commitdiff |
2017-05-30 |
gmungoc | JAL-2526 first draft of findIndex/findPosition with... |
commit | commitdiff |
2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue position... |
commit | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
commit | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
commit | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
commit | commitdiff |
2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
commit | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);... |
commit | commitdiff |
2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetS... |
commit | commitdiff |
2017-04-27 |
gmungoc | JAL-2480 don't allow null type in SequenceFeature |
commit | commitdiff |
2016-11-24 |
tcofoegbu | JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring |
commit | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
commit | commitdiff |
2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
commit | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 format tests |
commit | commitdiff |
2016-10-03 |
gmungoc | JAL-2110 additional tests for setDatasetSequence, javad... |
commit | commitdiff |
2016-09-28 |
Jim Procter | JAL-2210 JAL-2235 fix deriveSequence test for tightened... |
commit | commitdiff |
2016-09-28 |
Jim Procter | JAL-2235 implicit test to check that exception is raise... |
commit | commitdiff |
2016-09-16 |
gmungoc | JAL-2157 JAL-1803 refactored Sequence.updatePDBIds... |
commit | commitdiff |
2016-09-05 |
gmungoc | JAL-2106 increased coverage for testGetPrimaryDbRefs |
commit | commitdiff |
2016-09-04 |
Jim Procter | JAL-1803 JAL-2106 patch tests for tighter PDB Primary... |
commit | commitdiff |
2016-08-25 |
Jim Procter | JAL-2106 tighten DBRefEntry primary seq test for PDB |
commit | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
commit | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
commit | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 rejig test to minimally verify patch that... |
commit | commitdiff |
2016-08-23 |
gmungoc | JAL-2174 markColumns() refactored inside ColumnSelection |
commit | commitdiff |
2016-07-04 |
gmungoc | JAL-2110 added another test case (should fail but doesn't) |
commit | commitdiff |
2016-07-04 |
gmungoc | Revert "JAL-2110 use shared alignment dataset when... |
commit | commitdiff |
2016-07-04 |
gmungoc | JAL-2110 use shared alignment dataset when copying... |
commit | commitdiff |
2016-06-23 |
Jim Procter | JAL-2110 SequenceI.isProtein method |
commit | commitdiff |
2016-05-31 |
gmungoc | JAL-2110 refactor + tests to allow a dbref version... |
commit | commitdiff |
2016-05-17 |
tcofoegbu | JAL-1270 Fixed anntatedPDBFileInputTest and updated... |
commit | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC about cyclic dataset sequence references... |
commit | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 revise test for ambiguous case |
commit | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 ambiguous test for addSequenceFeature when... |
commit | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC on addSequenceFeature behaviour after... |
commit | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 test behaviour of copy constructor in differen... |
commit | commitdiff |
2016-04-04 |
Jim Procter | JAL-2046 basic test to make sure any derived sequence... |
commit | commitdiff |
2016-04-01 |
gmungoc | JAL-2046 fix for broken test for deriveSequence |
commit | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
commit | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
commit | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
commit | commitdiff |
2015-11-30 |
gmungoc | JAL-1270 constructor tests added, compiler warnings... |
commit | commitdiff |
2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
commit | commitdiff |
2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
commit | commitdiff |
2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
commit | commitdiff |
2015-09-10 |
Jim Procter | JAL-1645 licencing for new files in test and utils |
commit | commitdiff |
next |