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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
test
/
jalview
/
io
/
vcf
/ VCFLoaderTest.java
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
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2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
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2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
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commitdiff
2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
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2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-12
gmungoc
JAL-1270 missing 'alwaysRun=true' added to setup/teardown
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2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
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2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
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commitdiff
2018-02-20
gmungoc
JAL-2897 updated unit test for code change
features/JAL-1793VCF
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2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
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commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
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2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
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2017-11-16
gmungoc
JAL-2835 update test for CSQ data held as a Map
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-24
gmungoc
JAL-2743 slightly fancier species/assembly matching...
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2017-10-20
gmungoc
Push 1793 latest to spike branch
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2017-10-09
gmungoc
JAL-2738 assertion for derived protein variant added
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2017-10-09
gmungoc
JAL-2738 remove commented code, unit test coverage
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-10-03
gmungoc
JAL-2738 update test for threaded VCFLoader
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2017-09-28
gmungoc
JAL-1796 GeneLociI as distinguished DBRefEntry
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2017-09-26
gmungoc
JAL-2738 unit test for reverse strand gene
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2017-09-25
gmungoc
JAL-2738 use complement base for a VCF variant on rever...
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2017-09-25
gmungoc
JAL-2738 query unindexed file, unit test for VCFLoader
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