Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / test / jalview / io / vcf / VCFLoaderTest.java
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ...
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued...
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
2019-07-26 gmungocJAL-1793 only decode specific special characters in...
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now...
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown
2019-02-22 gmungocJAL-2738 don't set AF as feature score
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested)
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere...
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader