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JAL-2759 Changes to getVisibleSequenceStrings after review
[jalview.git] / test / jalview / io /
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor. tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 cross-ref selection for targeted debugging tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 source formatting tree | commitdiff
2017-08-22 gmungocJAL-2680 remove all mappings in test teardown tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 Jim ProcterJAL-1270 testProps should also enable debug logging tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-31 gmungocJAL-2631 test updated for added kd graduated feature... tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact... tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior... tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues tree | commitdiff
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 Unit test for bug tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 tcofoegbuJAL-1648 added unit test for AppCache tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... tree | commitdiff
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix tree | commitdiff
2017-02-17 gmungocJAL-2416 allow space in score matrix name tree | commitdiff
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring tree | commitdiff
2016-11-24 gmungocFurther tweaks to get tests passing tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
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