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Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatures' into develop
[jalview.git] / test / jalview / io /
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-10-23 James ProcterJAL-4308 reduce number of refs to 5, always have canoni... tree | commitdiff
2023-10-22 James ProcterJAL-4153 avoid use of invokeAndWait, increase wait... tree | commitdiff
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... tree | commitdiff
2023-10-01 James ProcterJAL-4160 update args used in test suite for new CLI... tree | commitdiff
2023-09-29 James ProcterJAL-4153 move JvCacheableInputBoxTest to testTask2 tree | commitdiff
2023-07-18 James ProcterJAL-4153 comments re patch incorrectly committed under... tree | commitdiff
2023-07-18 Ben SoaresJAL-4513 move comments tree | commitdiff
2023-07-18 Ben SoaresJAL-4513 now re-add the SwingUtilities.invokeAndWait... bug/JAL-4513_JvCacheableInputBoxTest_flaky_on_build_server tree | commitdiff
2023-07-18 Ben SoaresJAL-4513 reduce wait to invoke fail tree | commitdiff
2023-07-18 Ben SoaresJAL-4513 add a SwingUtilities.invokeAndWait() to see... tree | commitdiff
2023-07-12 James ProcterJAL-4223 - test and patch to ensure numbering matches... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-17 Ben SoaresJAL-629 Tidy up tests and replaced methods before merge... tree | commitdiff
2023-05-17 Ben SoaresJAL-629 delete stray files tree | commitdiff
2023-05-17 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-05-17 James ProcterJAL-4184 failing test for description export and re... tree | commitdiff
2023-05-03 Ben SoaresJAL-629 added eps and imagemap. Added --output and... tree | commitdiff
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-04-12 Ben SoaresJAL-629 mild improvement to test tree | commitdiff
2023-03-24 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-03-21 Ben SoaresJAL-629 null checks for Desktop.instance.closeAll(... tree | commitdiff
2023-03-20 James ProcterJAL-4153 longer Thread.sleep() calls in the hope that... tree | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... tree | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... tree | commitdiff
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... tree | commitdiff
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-04 Jim ProcterJAL-3806 JAL-3725 update tests since CDS mappings now... tree | commitdiff
2022-01-26 Jim ProcterJAL-3806 JAL-3725 propagate relaxed criteria for stop... tree | commitdiff
2022-01-17 Jim ProcterJAL-3703 patch Windows save file test for 2.11.1 codebase patch/r2_11_1_branch_JAL-3703_closing_files tree | commitdiff
2022-01-17 Ben SoaresJAL-3703 Test that fails in Windows only, and only... tree | commitdiff
2022-01-12 Ben SoaresJAL-3703 Test that fails in Windows only, and only... tree | commitdiff
2021-09-24 Jim ProcterJAL-3821 data file for failing test tree | commitdiff
2021-09-23 Jim ProcterJAL-3821 less ambiguous base class name for EMBL and... tree | commitdiff
2021-09-23 Jim ProcterJAL-3821 failing test tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-17 gmungocJAL-1260 unit test for FileFormats updated for GenBank/ENA tree | commitdiff
2021-09-17 gmungocJAL-1260 file formats and IdentifyFile updates for... tree | commitdiff
2021-09-17 gmungocJAL-1260 refactored GenBank (and EMBL) flat file parser tree | commitdiff
2021-09-16 gmungocJAL-3779 apply properties to all groups with given... tree | commitdiff
2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch... tree | commitdiff
2020-12-14 Ben SoaresJAL-3628 Test for doubly saved single backup file scheme tree | commitdiff
2020-10-28 Jim ProcterJAL-3725 fix tests for EMBLFlatFile parser when mapping... tree | commitdiff
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... tree | commitdiff
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... tree | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test tree | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... tree | commitdiff
2020-08-18 gmungocJAL-3692 parse multiline CDS location correctly tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL... tree | commitdiff
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each... tree | commitdiff
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... tree | commitdiff
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... tree | commitdiff
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API tree | commitdiff
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description tree | commitdiff
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test... tree | commitdiff
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring... tree | commitdiff
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... tree | commitdiff
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-07-27 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description tree | commitdiff
2020-07-27 gmungocJAL-3692 refactor/complete parsing, more unit test... tree | commitdiff
2020-07-24 gmungocJAL-3692 parse DE for description, and other refactoring... tree | commitdiff
2020-07-22 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... tree | commitdiff
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into... tree | commitdiff
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs() tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... tree | commitdiff
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips tree | commitdiff
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... tree | commitdiff
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... tree | commitdiff
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-06 gmungocMerge branch 'feature/JAL-3468featureDescriptionEllipsi... tree | commitdiff
2020-03-06 Ben SoaresJAL-3529 improved regex in Stockholm UNIPROT accession... tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 Fixed tests and added test for max-length... tree | commitdiff
2020-02-18 Jim ProcterJAL-3529 test for AC <Uniprot/EMBL> rather than DR... tree | commitdiff
2020-02-18 Jim ProcterJAL-3529 assert Uniprot refs must be provided as primar... tree | commitdiff
2020-02-17 Jim ProcterJAL-3536 failing test and test data tree | commitdiff
2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace... tree | commitdiff
2020-02-14 Jim ProcterJAL-3529 failing test for bug tree | commitdiff
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap tree | commitdiff
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... tree | commitdiff
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more... tree | commitdiff
2019-11-01 gmungocJAL-3468 unit tests updated for changes tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test... tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-26 gmungocJAL-1793 only decode specific special characters in... tree | commitdiff
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation tree | commitdiff
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