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JAL-4281 store/restore ID width and manual adjustment flag in Jalview projects
[jalview.git] / test / jalview /
2023-04-12 Ben SoaresJAL-629 Put old -props back as will now use old parser tree | commitdiff
2023-04-12 Ben SoaresJAL-629 Fix non-multi string bootstrap arg bug. tree | commitdiff
2023-04-12 Ben SoaresJAL-629 setprop test disabled as feature is disabled tree | commitdiff
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti... tree | commitdiff
2023-04-04 Ben SoaresJAL-629 --initsubstitutions as a bootstrap arg, new... tree | commitdiff
2023-04-03 Ben SoaresJAL-629 sort files from java glob for predictability... tree | commitdiff
2023-04-03 Ben SoaresJAL-629 Removed --headless to fix CommandsTest tree | commitdiff
2023-04-03 Ben SoaresJAL-629 added setprop. More filename based substitution... tree | commitdiff
2023-03-30 Ben SoaresJAL-629 More extensive tests with real files being... tree | commitdiff
2023-03-29 Ben SoaresJAL-629 extensive tests for ArgParser features tree | commitdiff
2023-03-29 Ben SoaresJAL-629 Added --opennew --nonews --nosplash. Added... tree | commitdiff
2023-03-24 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-03-24 Ben SoaresJAL-629 Test tidyup tree | commitdiff
2023-03-23 Ben SoaresJAL-629 don't clear appProps in tests tree | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... tree | commitdiff
2023-03-21 Ben SoaresJAL-629 null checks for Desktop.instance.closeAll(... tree | commitdiff
2023-03-20 James ProcterJAL-4134 override default hasTree so PAE tree is saved! tree | commitdiff
2023-03-20 James ProcterJAL-4153 longer Thread.sleep() calls in the hope that... tree | commitdiff
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr... tree | commitdiff
2023-03-20 James ProcterJAL-2349 test TODOs tree | commitdiff
2023-03-20 James ProcterJAL-2349 fix off by one when resolving columns for... tree | commitdiff
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row tree | commitdiff
2023-03-16 Ben SoaresJAL-629 fixed a test failing when run without a Jalview... tree | commitdiff
2023-03-15 James ProcterJAL-4091 JAL-629 ‘Add Reference Annotations’ takes... tree | commitdiff
2023-03-15 James ProcterJAL-4134 JAL-3855 store/restore groups, tree and thresh... tree | commitdiff
2023-03-15 Ben SoaresJAL-3833 fixed HiDPI test for macOS tree | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... tree | commitdiff
2023-03-13 Ben SoaresJAL-629 teardown in CommandsTest tree | commitdiff
2023-03-11 Ben SoaresJAL-629 start of CommandsTest. More ArgParserTests. tree | commitdiff
2023-03-10 Ben SoaresJAL-629 start of tests and more examples tree | commitdiff
2023-03-09 Ben SoaresJAL-629 start of tests tree | commitdiff
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... tree | commitdiff
2023-02-28 Ben SoaresJAL-629 Firm up bootstrapArgs. Correct '-colour' in... tree | commitdiff
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on... tree | commitdiff
2023-02-27 Ben SoaresJAL-629 JAL-4124 JAL-3855 remove deleted debugging... tree | commitdiff
2023-02-27 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-02-24 James ProcterJAL-629 JAL-4124 JAL-3855 test to check we can import... tree | commitdiff
2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... features/JAL-3858_PAEsInProjects tree | commitdiff
2023-02-24 Ben SoaresJAL-629 better test fixes. --props=... instead of ... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 test fixing tree | commitdiff
2023-02-23 James ProcterJAL-4134 group columns using a tree cut - seems to... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 Add debug messages for more failing tests tree | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 fixed a Log4j test by adding --debug arg tree | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... tree | commitdiff
2023-02-22 James ProcterJAL-3858 persist PAE matrix (only so far) as serialised... tree | commitdiff
2023-02-22 James ProcterJAL-1551 source formatting tree | commitdiff
2023-02-22 James ProcterJAL-3858 simple test for PAE matrix recovery tree | commitdiff
2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT... tree | commitdiff
2023-02-16 James ProcterJAL-1713 don’t close an automatically created overview... tree | commitdiff
2023-02-15 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... tree | commitdiff
2023-02-15 James ProcterPassing test for JAL-4127 failing on the JAL-1713 branch tree | commitdiff
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... tree | commitdiff
2023-02-10 James ProcterJAL-3077 broken conflict resolve resulted in failing... tree | commitdiff
2023-02-10 James ProcterJAL-4126 comment out closeAll - so we can visually... tree | commitdiff
2023-02-10 James ProcterJAL-4126 failing test - colour scheme appears to be... tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-02 James ProcterJAL-4119 JAL-2144 ‘invalid’ DBRefEntry has a null versi... patch/JAL-4119_sifts_ftp_split tree | commitdiff
2023-02-02 James ProcterJAL-4119 use split_xml directories rather than the... tree | commitdiff
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop tree | commitdiff
2023-01-26 Ben SoaresJAL-4118 remove unnecessary sleep from QuitHandlerTest tree | commitdiff
2023-01-26 Ben SoaresJAL-1988 Add a sleep to file save test to give time... tree | commitdiff
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... tree | commitdiff
2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop tree | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 missing mock server response tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api tree | commitdiff
2023-01-17 Ben SoaresMerge branch 'develop' into merge/JAL-1988_JAL-3772... tree | commitdiff
2022-11-30 Ben SoaresJAL-4101 Updated Rfam* tests tree | commitdiff
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-11-29 Ben SoaresJAL-4101 Updated Rfam* tests tree | commitdiff
2022-11-14 Ben SoaresJAL-4019 Put original test back tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 Added tests for new Nucleotide sequence detection tree | commitdiff
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Tests for various quitting scenarios tree | commitdiff
2022-10-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-26 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 formatting/pick correct exception tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns... tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 tests that probably should be part... tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF... tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... tree | commitdiff
2022-10-11 Jim ProcterJAL-4073 update tests tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 support incremental search of features tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 tests, bugfixes and TODOs for matching feature... tree | commitdiff
2022-09-15 Jim ProcterJAL-4062 avc operation and model method for copying... tree | commitdiff
2022-09-15 Jim ProcterMerge branch 'develop' into features/JAL-4061_and_JAL... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-09-14 Jim ProcterJAL-4061 JAL-4062 Find can now search features tree | commitdiff
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