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2005-09-22	amwaterhouse	Create Instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Dont calculate conservation for nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	isNucleotide	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Create instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Add nucleotide names	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Display nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Break if regex not found	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	If Mac user hasnt selected file format, give warning	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Wrap alignment with annotations	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Check if filefilter is null	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Jalview	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Sequences must be aligned before PCA	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Next active Frame losing focus bug fixed	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Use gtk icons	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	GTK icons	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Add carriage return after memory settings	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Checks end of sequence before drawing text	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Format label left align	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Optimise copy image	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel checks viewport selection group	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel checks viewport selection	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel just requires viewport	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Help gets bounds from help map file	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	New methods in treePanel	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Null pointer if user presses shift before anything...	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Align labels format left	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Optimise graphics copy object	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Use selectionGroup to find chosen sequences	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Make sure fontmetrics is not null	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Make sure fontmetrics exists for headless state	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Dont add ServiceListeners if desktop is null	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Alignment of node labels modified	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	ShowDistances, placeHolders and bootstraps have their...	commit \| commitdiff \| tree
2005-09-16	amwaterhouse	Check image is not null in fast paint	commit \| commitdiff \| tree
2005-09-16	amwaterhouse	Set distanceMenu selected true	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Memory settings added to help	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Correct date	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Copy uses fasta format	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	2.05b	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Add Uracil as X unknown	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	OptionPane warning for out of memory	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	remove system.out	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Remove key listener	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Dont add time to build date	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Add main-class to jar files	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Use equalsIgnoreCase	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Applet has main method, excutable	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Logger moved to prefs so that class not found error...	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Preferences updated	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Move bootStrap/distance settings outside thread	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Add end of consensus test for wrapped edit	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	fullSeqId should follow preference value	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Make new frame selected	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Remove system out tests	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Copy and paste uses FASTA format	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Call methods in treeCanvas on init	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	offy changes	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	OutOfMemory try catch	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Use font size, not font height	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Resize for mac	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Use getTreeFont instead of getFont	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	add fontname, size and style for trees	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Font change instead of font size	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Add Export tab	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Make button protected	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	use fontchooser to change fonts	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Center labels	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Save fonts for trees	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Change fonts in Treepanel	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Add header	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	System.gc after outofmemory	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	PCA is in outofmemory try-catch	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	TreeFont added, binding rebuilt	commit \| commitdiff \| tree
2005-09-13	amwaterhouse	Dont respond to mouse movements if alignment wrapped	commit \| commitdiff \| tree
2005-09-13	amwaterhouse	Give focus to textarea on startup	commit \| commitdiff \| tree
2005-09-13	amwaterhouse	EPSOptions added	commit \| commitdiff \| tree
2005-09-13	amwaterhouse	Warn if out of memory	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Remove gaps in regions, not char by char	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Always return true for directories	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	null pointers removed	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Null pointers removed	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Dont fastpaint if movement is zero	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Update overview after change	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Update overview in alignmentChanged	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Size checking in drawGraph	commit \| commitdiff \| tree
2005-09-12	amwaterhouse	Overview subsamples alignment	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Move tree property change to treePanel	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Only 1 NJtree	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	TreePanel takes viewport	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	REmove unnecessary imports	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Init PCA in thread	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	If no consensus, disable certain colour options	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	update consensus and conservation are in try catch...	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Optimise switch to fastPaint	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Correct mouse pressed bug	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Optimised for wide alignments	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Load in a thread	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Make menuitems protected	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	If vconsensus is null, return	commit \| commitdiff \| tree
2005-09-08	amwaterhouse	Add lowercase nucleotides to nucleotideHash	commit \| commitdiff \| tree
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