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Merge branch 'feature/JAL-3143ensemblJSON' into feature/JAL-3187linkedFeatures
2019-02-20 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into feature...
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2019-02-20 gmungocJAL-3187 read peptide variant from CSQ:HGVSp if present...
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2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover...
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2019-02-18 gmungocJAL-3187 reset ViewStyle on Cancel in FeatureSettings
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2019-02-18 gmungocJAL-3187 'on top' optional for complementary features
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2019-02-15 gmungocJAL-3010 getColumnClass() never return null
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2019-02-04 gmungocJAL-3143 update unit test for ID -> id change
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2019-01-29 gmungocJAL-3143 format alleles array for feature description
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2019-01-25 gmungocJAL-3187 return a colour for linked features with transparency
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2019-01-25 gmungocJAL-3187 set initial state of checkbox from viewport
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2019-01-25 gmungocJAL-3187 don't compute variant features on peptide...
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2019-01-23 gmungocJAL-3187 fix out by one feature on structure position
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2019-01-23 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-01-23 gmungocJAL-3063 correct handling of absent choice element...
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2019-01-22 gmungocJAL-3187 clunky sort by renderorder in findComplementFeature...
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2019-01-21 gmungocJAL-3187 also repaint complement on change in FeatureTypeSet...
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2019-01-21 gmungocJAL-3187 draw complement features on alignment / structure
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2019-01-21 gmungocJAL-3187 unit tests updated and errors caught
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2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order...
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2019-01-21 gmungocJAL-3187 repaint a 'following' complementary view on...
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2019-01-21 gmungocJAL-3187 (hacked up) show complement features on structure...
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2019-01-18 gmungocJAL-3187 basic first version for tooltips only (rendering...
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2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation...
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2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu
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2019-01-14 gmungocJAL-3186 remove duplicate message keys
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2019-01-14 gmungocJAL-2069 wider dialog so all fields show!
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2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold...
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2019-01-14 gmungocJAL-3125 tidy up
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2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value
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2019-01-03 gmungocJAL-1889 additional test for clover-added fields
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2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco
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2018-12-21 gmungocJAL-1767 minimise local variable scope
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2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method
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2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches
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2018-12-06 gmungocJAL-1854 fix Checkstyle import violations
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2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12
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2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second...
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2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
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2018-10-25 gmungocJAL-3143 unit tests updated for code changes!
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2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles,
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2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB...
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2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
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2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java binding...
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2018-09-24 gmungocJAL-3063 tidy commented out code
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2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
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2018-09-20 gmungocJAL-2843 tweaks to help text for filters
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2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature...
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2018-09-19 gmungocJAL-3120 preserve plain colour value when changing...
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2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load project...
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2018-09-19 gmungocJAL-3063 unit test for save/load project switched to...
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2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB
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2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18 gmungocJAL-3063 top level element added to colours schema...
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2018-09-18 gmungocJAL-3063 New View via JAXB
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2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load project...
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2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17 gmungocJAL-3116 test method renamed to match code
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2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocJAL-1551 reinstated Save actions
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2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_Branch
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2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
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2018-08-15 gmungocJAL-3080 remove tree partition if no groups created
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2018-08-14 gmungocJAL-3078 reset Tree font (only!) on Cancel
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2018-08-10 gmungocJAL-3018 updated to Ensembl REST 7.0
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2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
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2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
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2018-06-07 gmungocJAL-2920 format/comment tidy
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2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes...
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2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant...
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2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
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2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
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2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
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2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
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2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
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2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
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2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-05-25 gmungocJAL-2992 simpler heuristic for available height
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2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
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2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
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2018-05-24 gmungocJAL-2997 additional tests
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2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23 gmungocJAL-2997 unit test
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2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
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2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
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2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature
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2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
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2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
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