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2011-07-05	jprocter	Revert "Revert "needed for linkedapplets_ng.html (JAL...	commit \| commitdiff \| tree
2011-07-05	jprocter	Revert "needed for linkedapplets_ng.html (JAL-859,JAL...	commit \| commitdiff \| tree
2011-07-05	jprocter	needed for linkedapplets_ng.html (JAL-859,JAL-469)	commit \| commitdiff \| tree
2011-07-05	jprocter	ignore any events after manager has already been finalized.	commit \| commitdiff \| tree
2011-07-05	jprocter	refactor to send list of model filenames involved in...	commit \| commitdiff \| tree
2011-07-05	jprocter	(JAL-856,JAL-621)	commit \| commitdiff \| tree
2011-07-05	jprocter	new and restructured javascript examples and documentation...	commit \| commitdiff \| tree
2011-07-04	jprocter	jmb isn't created yet, so use another SSM provider	commit \| commitdiff \| tree
2011-07-03	jprocter	TODO re JAL-433 - filter events if alignFrame is specified...	commit \| commitdiff \| tree
2011-07-03	jprocter	documentation (JAL-859, JAL-816, JAL-621)	commit \| commitdiff \| tree
2011-07-03	jprocter	extracted jalviewlite API calls as separate interface...	commit \| commitdiff \| tree
2011-07-03	jprocter	groovy scripting examples (JAL-???)	commit \| commitdiff \| tree
2011-07-03	jprocter	javadoc built under dist directory for all Jalview...	commit \| commitdiff \| tree
2011-06-30	jprocter	set initial annotation panel height appropriately ...	commit \| commitdiff \| tree
2011-06-29	jprocter	standard embedded jalviewLite example (JAL-815)	commit \| commitdiff \| tree
2011-06-29	jprocter	documentation and targets for building a working applet...	commit \| commitdiff \| tree
2011-06-29	jprocter	repaint image buffer height change (JAL-564) and ensure...	commit \| commitdiff \| tree
2011-06-29	jprocter	repaint image buffer resize when panel height changes...	commit \| commitdiff \| tree
2011-06-29	jprocter	preliminary patch to reduce problem observed in JAL-546	commit \| commitdiff \| tree
2011-06-29	jprocter	ensure annotation height adjuster doesn't disappear...	commit \| commitdiff \| tree
2011-06-28	jprocter	fixes JAL-849 - double check after waiting a bit that...	commit \| commitdiff \| tree
2011-06-26	jprocter	reinstated valid XML content : additional for JAL-775	commit \| commitdiff \| tree
2011-06-26	jprocter	basic Netbeans project files and enriched build documentatio...	commit \| commitdiff \| tree
2011-06-24	jprocter	fix to preserve sequence numbering in MSF (JAL-847)	commit \| commitdiff \| tree
2011-06-23	jprocter	jmb isn't created yet, so use another SSM provider	commit \| commitdiff \| tree
2011-06-23	jprocter	patch for JAL-846 made targetChain mapping constraint...	commit \| commitdiff \| tree
2011-05-30	jprocter	bug for clients using NJTree directly - pwtype should...	commit \| commitdiff \| tree
2011-05-30	jprocter	first patch for JAL-838 - allow new typed of PID calcs	commit \| commitdiff \| tree
2011-05-19	jprocter	example applet and desktop application files that should...	commit \| commitdiff \| tree
2011-05-19	jprocter	example applet and desktop application files that should...	commit \| commitdiff \| tree
2011-05-19	jprocter	Revert "just a test"	commit \| commitdiff \| tree
2011-05-18	jprocter	just a test	commit \| commitdiff \| tree
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	commit \| commitdiff \| tree
2011-05-17	jprocter	interface for objects at root of a jalview session's	commit \| commitdiff \| tree
2011-05-17	jprocter	interface for handlers of alignmentViewPanel events	commit \| commitdiff \| tree
2011-05-17	jprocter	cruisecontrol again	commit \| commitdiff \| tree
2011-05-17	jprocter	another cc test	commit \| commitdiff \| tree
2011-05-17	jprocter	Merge branch 'master' of https://source.jalview.org...	commit \| commitdiff \| tree
2011-05-17	jprocter	test cruisecontrol	commit \| commitdiff \| tree
2011-05-17	jprocter	test cruisecontrol	commit \| commitdiff \| tree
2011-05-17	jprocter	ensure all colour statements added to string set	commit \| commitdiff \| tree
2011-05-05	jprocter	uncommentable debug message for JAL-771	commit \| commitdiff \| tree
2011-05-05	jprocter	html tags	commit \| commitdiff \| tree
2011-05-05	jprocter	improved javascript callback execution thread and provided...	commit \| commitdiff \| tree
2011-05-05	jprocter	separation of jmol script command generation from jmol...	commit \| commitdiff \| tree
2011-05-05	jprocter	javadoc and informative error message when external...	commit \| commitdiff \| tree
2011-05-05	jprocter	ensure feature renderer settings come from the given...	commit \| commitdiff \| tree
2011-05-05	jprocter	added simple stdout debug function	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - additional methods to allow jmol colouring...	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - patch to schema to allow jmol colouring state...	commit \| commitdiff \| tree
2011-04-25	jprocter	toggle of inclusion/exclusion of views for colouring...	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - ensure Jmol colouring is a radio button	commit \| commitdiff \| tree
2011-04-25	jprocter	documentation for JAL-824 and JAL-621	commit \| commitdiff \| tree
2011-04-25	jprocter	documentation for JAL-732	commit \| commitdiff \| tree
2011-04-25	jprocter	htmlfix	commit \| commitdiff \| tree
2011-04-22	jprocter	formatting	commit \| commitdiff \| tree
2011-04-22	jprocter	removed useless flag (was always null for button press...	commit \| commitdiff \| tree
2011-04-22	jprocter	JAL-823 and JAL-824 - seqColour no longer the default...	commit \| commitdiff \| tree
2011-04-22	jprocter	comments re JAL-823 legacy issue	commit \| commitdiff \| tree
2011-04-22	jprocter	clarify tooltip	commit \| commitdiff \| tree
2011-04-22	jprocter	moved loadingFromArchive flag modification to after...	commit \| commitdiff \| tree
2011-04-22	jprocter	option for enabling Jmol colouring mode JAL-824	commit \| commitdiff \| tree
2011-04-21	jprocter	JAL-641 patch	commit \| commitdiff \| tree
2011-04-21	jprocter	patch for JAL-733	commit \| commitdiff \| tree
2011-04-21	jprocter	patch for JAL-820 and JAL-821	commit \| commitdiff \| tree
2011-04-21	jprocter	separated alignment annotation height calculation from...	commit \| commitdiff \| tree
2011-04-21	jprocter	moved to same place as in jalview.gui	commit \| commitdiff \| tree
2011-04-21	jprocter	save and recover graph height, visibility and row position...	commit \| commitdiff \| tree
2011-04-21	jprocter	allow an alignment annotation row to be removed and...	commit \| commitdiff \| tree
2011-04-21	jprocter	allow an existing alignment annotation row to be bound...	commit \| commitdiff \| tree
2011-04-21	jprocter	added graphHeight attribute to schema (JAL-784)	commit \| commitdiff \| tree
2011-04-19	jprocter	avoid race condition when featureRenderer for structure...	commit \| commitdiff \| tree
2011-04-19	jprocter	patched XML parser to ensure it properly escapes non...	commit \| commitdiff \| tree
2011-04-08	jprocter	todo	commit \| commitdiff \| tree
2011-04-08	jprocter	imported properties via -props should never be overwritten	commit \| commitdiff \| tree
2011-04-08	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	resolves JAL-805	commit \| commitdiff \| tree
2011-04-07	jprocter	resolves JAL-804	commit \| commitdiff \| tree
2011-02-28	jprocter	excess imports	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for JAL-780	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for occasional ArrayIndexOutOfBounds	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for JAL-792	commit \| commitdiff \| tree
2011-02-27	jprocter	first patch for JAL-774 - ensure end is a valid bound...	commit \| commitdiff \| tree
2011-02-25	jprocter	first approximation for JAL-782 - hint that opaque...	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-777/JAL-641 debugging	commit \| commitdiff \| tree
2011-02-18	jprocter	new alignmentPanel api + JAL-777/JAL-641 debugging	commit \| commitdiff \| tree
2011-02-18	jprocter	fix scrolltoposition behaviour and new alignmentPanel api	commit \| commitdiff \| tree
2011-02-18	jprocter	fix scrolltoposition behaviour	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-574	commit \| commitdiff \| tree
2011-02-18	jprocter	convenience method to discover all Jmols	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-779 and some redraw refinements	commit \| commitdiff \| tree
2011-02-18	jprocter	JAl-574	commit \| commitdiff \| tree
2011-02-18	jprocter	avoid exceptions for orphaned windows	commit \| commitdiff \| tree
2011-02-18	jprocter	bugfixing for JAL-778	commit \| commitdiff \| tree
2011-02-18	jprocter	new multiple multiple view associations JAL-777	commit \| commitdiff \| tree
2011-02-18	jprocter	call to release any explicit event handler references...	commit \| commitdiff \| tree
2011-02-18	jprocter	dynamic alignmentPanel menu class	commit \| commitdiff \| tree
2011-02-18	jprocter	call to release any explicit event handler references	commit \| commitdiff \| tree
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