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2006-02-15	amwaterhouse	New FEature replaces new group	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Threshold is a single element	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	SetThreshold replaces addGraphLine	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	FeatureGroups added	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Removed SuperGroup	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Save sequence description in VAMSAS sequence	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Check description and status are not null in mouse...	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Keeps up to date with features	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Feature replaces new superGroup	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Feature Groups added	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Graphline is a single line	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	Features file has startgroup, endgroup	commit \| commitdiff \| tree
2006-02-15	amwaterhouse	No longer used	commit \| commitdiff \| tree
2006-02-13	amwaterhouse	Missing brace	commit \| commitdiff \| tree
2006-02-13	amwaterhouse	Parsing features file - dont adjust for alignment position	commit \| commitdiff \| tree
2006-02-10	amwaterhouse	Update overview if features updated	commit \| commitdiff \| tree
2006-02-10	amwaterhouse	Overview displays features	commit \| commitdiff \| tree
2006-02-09	amwaterhouse	Removed file	commit \| commitdiff \| tree
2006-02-09	amwaterhouse	Feature Settings added to Applet	commit \| commitdiff \| tree
2006-02-09	amwaterhouse	If conservation is zero, colour is white	commit \| commitdiff \| tree
2006-02-09	amwaterhouse	Drop target must initialise sequences	commit \| commitdiff \| tree
2006-02-09	amwaterhouse	New implementation for holding search results	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	parseResult takes the title as string. usually null	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	Make URL input window bigger	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	FormatAdapter throws exception	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	Check endRes	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	Copy dataset annotations for paste(this)	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	Colour above or below threshold	commit \| commitdiff \| tree
2006-02-08	amwaterhouse	Report invalid chars	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Added graphtype	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Graphtype added	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Conservation colouring does what it should always have...	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Make java 1.1 compatible	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Slight adjustments	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Fetch sequence(s)	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Java 1.1 compatible	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Many changes	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Save and load graph type	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Max size is 100 for conservation	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Retrieves PFAM alignments	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Slightly bigger for Mac	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Tooltip for multiple graph lines updated	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	set index of new annotation	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Allow for non graph annotations in combobox	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Reading features files readded as ref to FeatureRenderer...	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	has ref to annotation	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Add annotation with sequence ref updated	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Reads annotation files	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Applet draws line graphs	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Applet reads in annotation files	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	AA properties added	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	AA Properties	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	New images	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Updated images	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	removed	commit \| commitdiff \| tree
2006-02-03	amwaterhouse	Removed	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Cancel button is now close button	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Dont draw origin beyond end of alignment	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	No need for apply button, just update colours when...	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Get min and max colour added	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Can be used for annotation colouring	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Faster paint	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Use Antialias flag	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Smooth fonts added	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Null sequence check	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Monospaced indicator	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Unix drag and drop implemented	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	GraphGroups added	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Fast paint update	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Anti alias flag	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Drop annotations onto alignment	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Smooth fonts, annotation Colour	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Smooth font option	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	AddAnnotation with start index	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	New Class	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	New files	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Faster painting	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Allow features in overview window	commit \| commitdiff \| tree
2006-01-30	amwaterhouse	Allow embedded applet	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Check for null StringBuffer in getPDB	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Check for null StringBuffer in getPDB	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Jar file 20% smaller	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Reduced jar size by 20%	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Allow embedded applet	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	graph now has type, not a boolean	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Watch for trim left/right null widths	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	REGEX CANNOT BE STATIC	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Wrapped search scrolls to visible result	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Remove import	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Annotations.Graph can be bargraph, linegraph	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Remove printPoints	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Remove main method	commit \| commitdiff \| tree
2005-12-22	amwaterhouse	Load assocated tree	commit \| commitdiff \| tree
2005-12-15	amwaterhouse	Close body and html, dont put in table	commit \| commitdiff \| tree
2005-12-15	amwaterhouse	Prevents confusing extra line being output in Java...	commit \| commitdiff \| tree
2005-12-15	amwaterhouse	SetMenuBar(null) when closing frames. Prevents a bug...	commit \| commitdiff \| tree
2005-12-13	amwaterhouse	Broken link fixed	commit \| commitdiff \| tree
2005-12-13	amwaterhouse	Broken link fixed	commit \| commitdiff \| tree
2005-12-13	amwaterhouse	Version update	commit \| commitdiff \| tree
2005-12-13	amwaterhouse	Builds web TOC for help files	commit \| commitdiff \| tree
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