| 2006-11-13 |
amwaterhouse | Dont readd identical DBRef
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Use j not i
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Fasta files with * read not identified as BLC
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Querystring made from line tokenized seq name, seq...
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Colours in viewport
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Text colour adapter
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | sequence colours and text colours added
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | colours in viewport
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Save text colours
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Group Menu level changed
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Colour text
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Sequence colour in viewport
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Format menu item
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | text colour saved
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Sequence colour moved to viewport
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Text colour for group
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commit | commitdiff | tree |
| 2006-11-13 |
amwaterhouse | Save text colours
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | remove system.out
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | tooltip
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | Shortcuts
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | smooth font gone, setFileName and close open alignPanel
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | close frame true
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | smooth fonts moved here
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | cut and paste input output
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | close menu item true
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | New window
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | Smooth fonts
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | Shortcuts
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | Check conensus is not null
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | alignFrame.setFileName
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | Cutandpaste used for input/output
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commit | commitdiff | tree |
| 2006-11-09 |
amwaterhouse | 1.1 compatible
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Reload alignment
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Reload alignment
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Set description
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | currentSeq and set description in dataset
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Text by default
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Use sequence description
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Dont set the dataset name and description
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Tooltip on mouseover
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Apple friendly
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commit | commitdiff | tree |
| 2006-11-08 |
amwaterhouse | Remove unnecessary imports
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | warning note added to consequence
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | Dont load trees if copying Viewport
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | Check features.length>0
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | Color updated for new seq, OK is default option
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | Tidy up group size after alignmentChanged
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | hidden seqs and setOrder bug fixed
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commit | commitdiff | tree |
| 2006-11-07 |
amwaterhouse | Add keylistener to InternalFrame, not canvas
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | Only recalc consensus for start to end of group
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | Only calculate consenus from start to end
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | If start is not zero, we need to put -- at the start
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | example links
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | Remember fileName in alignFrame
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | dont limit menu size
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | accelerators, save menu item
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Alignpanel is not new if copied from j2xml
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Consensus may already have been removed
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Remove unnecessary refresh
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | return if image is null
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Update editMenuBar after alignment changed
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Set menu state in alignFrame
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Fire align change for case change
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | History is per viewport
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | selected states set in updateMenusFromViewport
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Use system path separator char
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | dasregistry is now dasregistry.org
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Fix for feature name amended
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | shift I to inverse sequence selection
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Append html
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Update features
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | conservation lock
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | deleteSequenceFeature
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Remove consensus annotation if out of memory
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | updatingConsensus, updatingConservation is static ...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | PaintRefresher can calculate seqs added or removed
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Dont remove or add PaintRefresher registrations for...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | -1 error
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Reset colour schemes and alignmentChanged moved to...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | If sequence is null, dont add it
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Rename old properties file before writing new
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Focus listener on Tabbed pane, gives keyboard focus...
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Only adds history item if size>0
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Returns number of columns deleted
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Remove system.out
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | void changeCase(ActionEvent e
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | set quality to null if removed
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | showConservation, quality, identity not used
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Dont readd the undo
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | check command.string[i] is not null
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Sequence length maybe less than end
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Error message changed
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Sequences may be hidden, not in this aligment
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Invert accelerators
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | sequence may be null if hidden or deleted
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Set alignFrame of gathered panels to be the source...
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | remove gaps size range
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | No need to reduce length if inserting more gaps at...
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commit | commitdiff | tree |
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