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2022-10-20	Jim Procter	JAL-3855 RGB colours from the alphafold paE scale.	commit \| commitdiff \| tree
2022-10-19	Jim Procter	JAL-2349 JAL-4033 refactored contact matrix geom calc...	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-2349 JAL-3855 column selection highlighting	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-3855 bump AF version to 3 - keep contact renderer...	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-2349 JAL-3855 tests that probably should be part...	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-3855 report download errors as errors!	commit \| commitdiff \| tree
2022-10-17	Jim Procter	JAL-2349 JAL-3855 Integrate pAE retrieval in StructureFile...	commit \| commitdiff \| tree
2022-10-15	Jim Procter	JAL-2349 reusable contact map holder for SequenceI...	commit \| commitdiff \| tree
2022-10-15	Jim Procter	JAL-3855 2349 TODO	commit \| commitdiff \| tree
2022-10-15	Jim Procter	JAL-3855 import pAE when StructureSelectionManager...	commit \| commitdiff \| tree
2022-10-15	Jim Procter	JAL-3855 pAE v2 import	commit \| commitdiff \| tree
2022-10-14	Jim Procter	JAL-3855 refactor the pAE retrieval code so it can...	commit \| commitdiff \| tree
2022-10-14	Jim Procter	Merge branch 'features/JAL-3895_alphafoldcolours' into...	commit \| commitdiff \| tree
2022-10-14	Jim Procter	Merge branch 'develop' into features/JAL-3895_alphafoldcolours	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4065 final fix for 2.11.2.5 - 5pm BST release	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4065 revised to avoid a visit from the apostrophe...	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4073 update tests	commit \| commitdiff \| tree
2022-10-11	Jim Procter	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4073 fix PEBCAK failure	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4065 revised whatsNew to make sense !	commit \| commitdiff \| tree
2022-10-11	Jim Procter	JAL-4065 release 2.11.2.5 date is 11th Oct	commit \| commitdiff \| tree
2022-10-07	Jim Procter	Fix for JAL-4075 - don’t write a label in secondary...	commit \| commitdiff \| tree
2022-10-07	Jim Procter	JAL-4065 update citations for Pfam and Rfam and added...	commit \| commitdiff \| tree
2022-10-07	Jim Procter	JAL-4065 2.11.2.5 release version bump	commit \| commitdiff \| tree
2022-10-07	Jim Procter	JAL-4065 release notes and updated release date for...	commit \| commitdiff \| tree
2022-10-06	Jim Procter	stable url for PFAM retrieval via interpro api :) JAL...	commit \| commitdiff \| tree
2022-10-06	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2022-10-06	Jim Procter	JAL-3895 alphafold colours via pluggable annotation...	commit \| commitdiff \| tree
2022-10-06	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2022-10-06	Jim Procter	JAL-4065 release notes for JAL-4073 JAL-4074	commit \| commitdiff \| tree
2022-10-06	Jim Procter	JAL-4073 Pfam retrieval now works via a template including...	commit \| commitdiff \| tree
2022-10-06	Jim Procter	Patch for JAL-4074 - any content ending in ‘gzip’ recognised...	commit \| commitdiff \| tree
2022-09-15	Jim Procter	JAL-4065 release notes for JAL-4014 and JAL-4063 in...	commit \| commitdiff \| tree
2022-09-15	Jim Procter	JAL-4065 - new release notes featuring JAL-3612 fix	commit \| commitdiff \| tree
2022-09-14	Jim Procter	Merge branch 'bug/JAL-3612_overviewFeatureOrdering...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4046 release on 9th August 2022	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4046 JAL-3993 imports reformatting	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4046 JAL-3993 patch for 2.11.2.4 release	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4046 release notes for JAL-3991	commit \| commitdiff \| tree
2022-08-08	Jim Procter	Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_agains...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4046 release notes for JAL-4014 - gecos colourschemes	commit \| commitdiff \| tree
2022-08-08	Jim Procter	Merge branch 'improvement/JAL-4014_gecos_colour_schemes...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4056 documented in release notes for JAL-4043	commit \| commitdiff \| tree
2022-08-08	Jim Procter	Merge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoint...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4043 what’s new, updated help images and release...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	JAL-4034 show the loading spinner when switching between...	commit \| commitdiff \| tree
2022-08-08	Jim Procter	Merge branch 'features/JAL-4034_improve_3dbeacons_button_and...	commit \| commitdiff \| tree
2022-07-20	Jim Procter	JAL-4046 started release notes for 2.11.2.4 patch release	commit \| commitdiff \| tree
2022-07-20	Jim Procter	JAL-4045 - don't apply distribution dependent scale...	commit \| commitdiff \| tree
2022-07-05	Jim Procter	JAL-4012 release date bump and JAL-4004 tweak to include...	commit \| commitdiff \| tree
2022-07-04	Jim Procter	JAL-4034 fix #3 change uniprot ref fetch dialog to...	commit \| commitdiff \| tree
2022-07-04	Jim Procter	JAL-4034 Fix #2 show an icon and a button to press...	commit \| commitdiff \| tree
2022-07-04	Jim Procter	JAL-4034 fix 1 - reword button	commit \| commitdiff \| tree
2022-07-04	Jim Procter	JAL-4012 updated release date and whats new for 2.11.2.3	commit \| commitdiff \| tree
2022-07-01	Jim Procter	JAL-4012 tweak release notes wording for legacy.uniprot	commit \| commitdiff \| tree
2022-07-01	Jim Procter	Merge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoint...	commit \| commitdiff \| tree
2022-07-01	Jim Procter	JAL-4036 JAL-4012 note about Uniprot FTS workaround...	commit \| commitdiff \| tree
2022-06-30	Jim Procter	JAL-4036 use the legacy endpoint (and report the FTS...	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-2349 TODO for tests	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-2349 JAL-3855 formatting	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-4033 TODO re highlighting current column selection	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-2349 debugged and simplified (a little) the scaled...	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-3855 update EBI Alphafold barcoded URL generation...	commit \| commitdiff \| tree
2022-06-24	Jim Procter	JAL-2349 JAL-3855 resolve sequence position for contact...	commit \| commitdiff \| tree
2022-06-15	Jim Procter	JAL-4012 release notes for JAL-1988,JAL-3416	commit \| commitdiff \| tree
2022-06-15	Jim Procter	JAL-1988 JAL-3416 avoid unnecessary static flag	commit \| commitdiff \| tree
2022-06-15	Jim Procter	JAL-3418 JAL-1988 don’t need java version check anymore	commit \| commitdiff \| tree
2022-06-15	Jim Procter	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...	commit \| commitdiff \| tree
2022-06-13	Jim Procter	Merge branch 'improvement/JAL-1988+JAL-3416_flatlaf_osx_apqh...	commit \| commitdiff \| tree
2022-06-13	Jim Procter	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...	commit \| commitdiff \| tree
2022-06-10	Jim Procter	JAL-2349 JAL-4027 JAL-3855 quick hack to add contact...	commit \| commitdiff \| tree
2022-06-10	Jim Procter	JAL-4027 getter for contact matrices on the Alignment.	commit \| commitdiff \| tree
2022-06-10	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2022-06-10	Jim Procter	Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4012 - JAL-4020 release notes and a bit of ‘troubleshoot...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	Merge branch 'bug/JAL-4020_add_pymolwin_paths' into...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4004 add the autogenerated whatsNew.html and releases...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4014 release notes for JAL-4026 patches	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 increase timeouts for command line ops	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 ignore StructureSelectionManager events if...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 always wait 50ms before checking if the calculation...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 update the viewport’s wrapped width after...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4014 release notes for JAL-4023 and JAL-4024	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'improvement/JAL-4023_snotation_for_trees...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'patch/JAL-4024_jumpScrollHang' into develop	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4012 what’s new and release notes (in the new styleee...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4004 delete temporary file mistakenly checked in	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4024 only render partially when new view overlaps...	commit \| commitdiff \| tree
2022-06-06	Jim Procter	JAL-4023 use %g for distances (scientific notation...	commit \| commitdiff \| tree
2022-06-06	Jim Procter	JAL-4023 store distances as doubles	commit \| commitdiff \| tree
2022-05-11	Jim Procter	Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into...	commit \| commitdiff \| tree
2022-05-11	Jim Procter	JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3	commit \| commitdiff \| tree
2022-05-10	Jim Procter	JAL-4008 update jabaws client to 2.2.1 - definitely...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-04-19	Jim Procter	JAL-3992 bump version and report updates in 2.11.2...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm...	commit \| commitdiff \| tree
2022-04-18	Jim Procter	JAL-3997 check for tooltip being null before checking...	commit \| commitdiff \| tree
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