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Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892' into develop
2015-06-17
gmungoc
JAL-1588 restore ChimeraViewFrame geometry as well
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2015-06-17
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-17
gmungoc
JAL-1778 reinstated this.ssm to handle 'close all windows...
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2015-06-15
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-15
gmungoc
JAL-1778 deregister as a listener when panel closed
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2015-06-10
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-10
gmungoc
Merge remote-tracking branch
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2015-06-10
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-10
gmungoc
JAL-1764 save Chimera/Jmol state as separate entries...
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2015-06-08
gmungoc
JAl-1421 fix method reflection argument (properly this...
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2015-06-08
gmungoc
JAL-1421 undid premature 'improvement' of method parameter...
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2015-06-05
gmungoc
JAL-1752 structure highlight scoped to only its mapped...
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2015-06-05
gmungoc
JAL-1588 error dialog if Chimera project opened on...
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2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
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2015-06-05
gmungoc
JAL-1746 return empty string rather than null in getStateInfo
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2015-06-05
gmungoc
JAL-1622 Chimera command timeout increased to 5 secs...
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2015-06-05
gmungoc
JAL-1622 duplicate assignment removed (no functional...
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2015-06-05
gmungoc
JAL-1753 JAL-1596 asynchronous command to Chimera ...
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2015-06-05
gmungoc
JAL-1622 code tidy only, no functional change
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2015-06-05
gmungoc
JAL-1749 correcting snafu in last commit
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2015-06-04
gmungoc
Clear status bar message when initialisation complete
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2015-06-04
gmungoc
JAL-1750 small tidy of AlignSeq.printMapping (+Junit)
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2015-06-04
gmungoc
JAL-1544 spelling in javadoc only
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2015-06-04
gmungoc
JAL-1622 code tidy (+Junit) of collateForPdb()
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2015-06-04
gmungoc
JAL-1747 close all windows on Quit (+small bug fix)
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2015-06-04
gmungoc
toString method added to aid viewing in the debugger
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2015-06-04
gmungoc
JAL-1270 testToString added
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2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
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2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
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2015-06-04
gmungoc
JAL-1743 View Chain sub-menu now being populated
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2015-06-04
gmungoc
JAL-1753 statusPanel added (for ProgressBar); 'Fit...
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2015-06-04
gmungoc
JAL-1753 ChimeraViewFrame hosts its own ProgressBar
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2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
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2015-06-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
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2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 declare field with interface type; check for...
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2015-05-29
gmungoc
JAL-1753 Junit for new class
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 duplicated code refactored to new class ProgressBar
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-796 JAL-1652 better implementation (key binding...
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2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
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2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
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2015-05-18
gmungoc
JAL-1652 Escape key now closes Find dialog
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2015-05-18
gmungoc
JAL-1737 updated JUnit so it creates positional annotations
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
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2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
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2015-05-15
gmungoc
JAL-1737 ignore non-positional annotations for display
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2015-05-15
gmungoc
JAL-1270 added test for regex actually used; include...
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2015-05-15
gmungoc
JAL-1270 main methods converted to JUnit
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2015-05-14
gmungoc
JAL-1727 JAL-1270 obsolete DAS registry URL updated...
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2015-05-14
gmungoc
JAL-1270 set Cache properties in setUp to ensure test...
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2015-05-13
gmungoc
JAL-1575 no-cache headers added to (empty) rest response
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2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flanking...
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2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
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2015-05-06
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
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2015-05-06
gmungoc
JAL-1725 broadcast empty selection (to clear selection)
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2015-05-06
gmungoc
JAL-1725 limit thread pool size; prefix /jalview to...
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2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
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2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
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2015-05-05
gmungoc
JAL-1725 jetty libraries added to classpath
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2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera selection...
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2015-05-01
gmungoc
JAL-1684 hook added to test for fields ignored in copy...
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2015-05-01
gmungoc
JAL-1690 refining 'copy format from' as applied to...
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2015-05-01
gmungoc
JAL-1690 unused fields removed
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2015-04-30
Mungo Carstairs
JAL-845 reduced height to allow for Desktop decorators...
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2015-04-29
gmungoc
JAL-1690 preserve scaling in New View, synch id width...
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2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
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2015-04-28
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
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2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
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2015-04-27
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
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2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
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2015-04-24
gmungoc
JAL-1691 prevent propagation of scrolling on mouseover...
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2015-04-23
gmungoc
JAL-1702 corrected check for 'no colours selected'
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2015-04-23
gmungoc
JAL-1706 distinguish between 'font too small' and ...
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2015-04-23
gmungoc
JAL-1681 create mappings before AlignFrame to ensure...
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2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
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2015-04-23
gmungoc
JAL-845 set split frame divider safely for eXpand Views
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2015-04-23
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
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2015-04-23
gmungoc
JAL-1706 fixed to correctly restore the last dialog...
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2015-04-22
gmungoc
JAL-845 fix SplitFrame sizing on eXpand Views
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2015-04-22
gmungoc
'Test' added to help identify "too small" font families...
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2015-04-22
gmungoc
JAL-1690 fix NPE on Cancel when not in split frame
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2015-04-21
gmungoc
JAL-1693 mappings added back to the original alignment
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2015-04-21
gmungoc
JAL-1702 wording improved; also some duplicate entries...
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2015-04-20
gmungoc
JAL-1690 shorter text to fit in FontChooser dialog
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2015-04-20
gmungoc
JAL-1701 first draft of help page for Split View (not...
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2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
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2015-04-13
gmungoc
JAL-1695 enableSplitFrame=true for applet example
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2015-04-13
gmungoc
JAL-1690 adjusted wording
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2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
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