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2015-08-19	gmungoc	JAL-1782 don't save TESTNG output summary to git	commit \| commitdiff \| tree
2015-08-19	gmungoc	JAL-1725 log to sysout when listener shuts down	commit \| commitdiff \| tree
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	commit \| commitdiff \| tree
2015-08-17	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1800 separated SearchResults.getCharacters() from...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1270 testIsMappable added	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1805 corrected javadoc only	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1800 smarter matching when following mouseover...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1691 scan full width and depth of alignment for...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1800 SearchResults.equals() to allow smarter mouseover...	commit \| commitdiff \| tree
2015-08-17	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1551 updated to reflect changes to Eclipse preferences...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1551 properties sorted (unchanged) for ease of...	commit \| commitdiff \| tree
2015-08-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-10	gmungoc	JAL-1516 indent multiple annotation parameters on new...	commit \| commitdiff \| tree
2015-07-15	gmungoc	JAL-1813 only pair up A-Z with a-z if annotation is RNA	commit \| commitdiff \| tree
2015-07-12	gmungoc	JAL-1759 corrected jmol applet lib name	commit \| commitdiff \| tree
2015-07-08	gmungoc	JAL-1759 merge from develop	commit \| commitdiff \| tree
2015-07-08	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-07-08	gmungoc	JAL-1598 replaced faulty regex, amended Varna call...	commit \| commitdiff \| tree
2015-07-06	gmungoc	JAL-1081 unit tests added	commit \| commitdiff \| tree
2015-07-06	gmungoc	JAL-1782 refactored test to ensure it passes in TestNG	commit \| commitdiff \| tree
2015-07-06	gmungoc	JAL-1421 generics used for leaner safer code	commit \| commitdiff \| tree
2015-07-06	gmungoc	JAL-1799 tweaked calculation for applet, now showing...	commit \| commitdiff \| tree
2015-07-06	gmungoc	JAL-1799 equivalent logic in applet	commit \| commitdiff \| tree
2015-07-03	gmungoc	JAL-1759 updated Jmol version in nbproject, install...	commit \| commitdiff \| tree
2015-07-03	gmungoc	JAL-892 jnlp, installAnywhere, build, licence references...	commit \| commitdiff \| tree
2015-07-03	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	commit \| commitdiff \| tree
2015-07-03	gmungoc	JAL-892 1 second delay for correct initial rendering...	commit \| commitdiff \| tree
2015-07-02	gmungoc	JAL-1677 check all response lines when parsing REST...	commit \| commitdiff \| tree
2015-07-01	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1681 more condensed tooltip where codons share...	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1802 explanatory comment added	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1802 handle slide sequences edits in split frame...	commit \| commitdiff \| tree
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1799 deduct more space for decorators on Windows	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1619 align the added sequences to match what they...	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL=1759 fix Jmol state command bug; remove debug output	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 unused JmolPopup removed, code tidy for generics	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 deprecated EnfinEnvision2OneWay removed	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 JMol now Jmol !	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 unused field / methods removed	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1691 trackpad scrolling goes to full width even...	commit \| commitdiff \| tree
2015-06-29	gmungoc	JAL-1799 adjusted annotation height calculation	commit \| commitdiff \| tree
2015-06-29	gmungoc	JAL-1759 correct conversion of Jmol Chain.chainId ...	commit \| commitdiff \| tree
2015-06-26	gmungoc	JAL-1782 BeforeMethod added to fix test in NG	commit \| commitdiff \| tree
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	commit \| commitdiff \| tree
2015-06-26	gmungoc	JAL-1759 changed to non-deprecated Viewer.renderScreenImage()	commit \| commitdiff \| tree
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	commit \| commitdiff \| tree
2015-06-26	gmungoc	JAL-1759 updates for Jmol 14.2.14_25.06.11	commit \| commitdiff \| tree
2015-06-22	gmungoc	JAL-892 tidy Varna panel names; JAL-1789 simplified...	commit \| commitdiff \| tree
2015-06-22	gmungoc	JAL-893 upgrade to VARNAv3-93.jar	commit \| commitdiff \| tree
2015-06-19	gmungoc	JAL-892 check viewer is linked to alignment panel on...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1270 test added	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1544 typos in comments	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-892 JAL-1779 save/restore Varna viewer to/from...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-892 schema changes (rnaViewer) for save Varna to...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1781 annotation.sequenceRef now sequence id not...	commit \| commitdiff \| tree
2015-06-17	gmungoc	JAL-1588 restore ChimeraViewFrame geometry as well	commit \| commitdiff \| tree
2015-06-17	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-17	gmungoc	JAL-1778 reinstated this.ssm to handle 'close all windows...	commit \| commitdiff \| tree
2015-06-15	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-15	gmungoc	JAL-1778 deregister as a listener when panel closed	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge remote-tracking branch	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	commit \| commitdiff \| tree
2015-06-08	gmungoc	JAl-1421 fix method reflection argument (properly this...	commit \| commitdiff \| tree
2015-06-08	gmungoc	JAL-1421 undid premature 'improvement' of method parameter...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1752 structure highlight scoped to only its mapped...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1588 error dialog if Chimera project opened on...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 fix bug computing superposition + associated...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1746 return empty string rather than null in getStateInfo	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 Chimera command timeout increased to 5 secs...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 duplicate assignment removed (no functional...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1753 JAL-1596 asynchronous command to Chimera ...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 code tidy only, no functional change	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1749 correcting snafu in last commit	commit \| commitdiff \| tree
2015-06-04	gmungoc	Clear status bar message when initialisation complete	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1750 small tidy of AlignSeq.printMapping (+Junit)	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1544 spelling in javadoc only	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1622 code tidy (+Junit) of collateForPdb()	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1747 close all windows on Quit (+small bug fix)	commit \| commitdiff \| tree
2015-06-04	gmungoc	toString method added to aid viewing in the debugger	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1270 testToString added	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1743 new Chimera menu option to 'fit to window'	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1743 View Chain sub-menu now being populated	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1753 statusPanel added (for ProgressBar); 'Fit...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1753 ChimeraViewFrame hosts its own ProgressBar	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1742 don't offer to align another chain to the...	commit \| commitdiff \| tree
2015-06-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1757 match only first altloc CA in PDB structure...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1421 generic collections in MCView package (+unit...	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 declare field with interface type; check for...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 Junit for new class	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
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