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JAL-1479 minor refactor and housekeeping
2016-06-27 gmungoctidied loop with generic iteration / loop variable
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2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
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2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverReferenceS...
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2016-06-27 gmungocJAL-1270 unit tests for HiddenSequences
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2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down...
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2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests
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2016-06-22 gmungocJAL-1982 defensive checks for null annotations array
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2016-06-22 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-06-22 gmungocJAL-1982 defensive test for null array of annotations
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2016-06-21 gmungocJAL-2074 suppress prompt to save closed Groovy script...
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2016-06-21 gmungocJAL-1270 remove test artefact file after test
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2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method
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2016-06-21 gmungocJAL-2074 reuse Groovy window when reopening; rebind...
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2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol
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2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (without...
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2016-06-17 gmungocJAL-1557 selection from annotation (and group annotation...
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2016-06-16 gmungocJAL-1993 close sequence fetcher when opening database...
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2016-06-16 gmungocJAL-2124 JAL-1990 additional translations
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2016-06-16 gmungocJAL-2112 optimisation of EMBL CDS parsing
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2016-06-16 gmungocJAL-1993 hide sequence fetcher dialogue until database...
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2016-06-15 gmungocJAL-2025 unit tests added
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2016-06-15 gmungocJAL-2101 unit test updated to match config file
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2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures
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2016-06-14 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-06-09 gmungocJAL-2114 corrected Javadoc
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2016-06-02 gmungocJAL-2124 additional Spanish text strings
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2016-06-02 gmungocJAL-1424 corrected typos in message text keys
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2016-06-02 gmungocJAL-1424 removed duplicate entry and unneeded full...
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2016-06-01 gmungocJAL-1424 clearer messaging
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2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used...
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2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame...
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2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version...
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2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections...
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2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label...
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2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example...
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2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-05-30 gmungocJAL-1989 equals method strengthened to fully match...
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2016-05-30 gmungocJAL-2119 help links checker added to /utils
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2016-05-30 gmungocJAL-2119 updated Valdar group link
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2016-05-29 gmungocJAL-2119 fixes for broken links in help files
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2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection...
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2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to...
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2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each...
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2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed...
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2016-05-27 gmungocJAL-1911 correct typo in field name
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2016-05-26 gmungocJAL-391 add reverse / complement to command history...
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2016-05-26 gmungocJAL-2035 relocated a comment
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2016-05-26 gmungocJAL-1670 add non-positional feature with link to demonstrate...
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2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences'
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2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /...
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2016-05-26 gmungocJAL-2008 drag to reorder features not available in...
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2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain
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2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models...
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2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling...
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2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature...
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2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc
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2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove...
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2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2
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2016-05-20 gmungocJAL-2114 explicit invalid test cases added
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2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax
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2016-05-20 gmungocJAL-2113 removed classes deleted from mapping
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2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL...
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2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
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2016-05-20 gmungocJAL-2115 updated web link for MAFFT (and one typo)
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2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature...
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2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
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2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
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2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for...
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2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
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2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST version...
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2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly
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2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
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2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature...
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2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
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2016-05-05 gmungocJAL-2068 better documentation in example script
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2016-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar
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2016-05-04 gmungocJAL-2092 hide columns with/without feature
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2016-05-04 gmungocJAL-2074 corrected classpathentry for Groovy 2.4.6
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2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
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2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency
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2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
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2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop...
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2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated...
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2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
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2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
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2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-04-25 gmungocJAL-2078 fixed broken link to groovy page
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2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open...
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2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
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2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
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2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable...
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2016-04-22 gmungocJAL-2068 Javadoc added
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2016-04-22 gmungocJAL-2068 redundant implements clauses removed
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2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
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