git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-2939 simplified way of getting hmm consensus residue
2018-03-30 gmungocJAL-2939 simplified way of getting hmm consensus residue
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 add title to output alignment window
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 select HMM selects sequence under cursor
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2599 corrected test file name in unit test
 commit | commitdiff | tree
2018-03-29 gmungocJAL-2907 test method renamed to match method name change
 commit | commitdiff | tree
2018-03-29 gmungocJAL-2907 bug fix redone on HMMER branch
 commit | commitdiff | tree
2018-03-28 gmungocJAL-1265 output all dbrefs in Stockholm (+tests) (...
commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
 commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 unused action handler methods removed
 commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 no need to recalc HMM annotation for show...
commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 always store Information profile
 commit | commitdiff | tree
2018-03-23 gmungocJAL-2629 pad gaps when exporting alignment as 'database...
commit | commitdiff | tree
2018-03-23 gmungocJAL-2937 unused field removed
 commit | commitdiff | tree
2018-03-23 gmungocJAL-2938 update colour schemes enum for class name...
commit | commitdiff | tree
2018-03-23 gmungocJAL-2938 extracted base class for Hmmer colour schems
 commit | commitdiff | tree
2018-03-21 gmungocJAL-2629 tweaks to Information annotation updating
 commit | commitdiff | tree
2018-03-20 gmungocJAL-2629 InformationThread.findOrCreateAnnotation and...
commit | commitdiff | tree
2018-03-20 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
commit | commitdiff | tree
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
commit | commitdiff | tree
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
 commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'develop' into trialMerge
 commit | commitdiff | tree
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
 commit | commitdiff | tree
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
commit | commitdiff | tree
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
 commit | commitdiff | tree
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
 commit | commitdiff | tree
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
 commit | commitdiff | tree
2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
commit | commitdiff | tree
2018-03-08 gmungocJAL-2885 tests updated for code changes
 commit | commitdiff | tree
2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
 commit | commitdiff | tree
2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
 commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
 commit | commitdiff | tree
2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
 commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM...
commit | commitdiff | tree
2018-03-02 gmungocJAL-2729 draft help pages for HMMER menu
 commit | commitdiff | tree
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip)
 commit | commitdiff | tree
2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions
 commit | commitdiff | tree
2018-02-28 gmungocJAL-2629 some tidying of Hmmer commands (wip)
 commit | commitdiff | tree
2018-02-27 gmungocJAL-2668 method name change for clarity
 commit | commitdiff | tree
2018-02-27 gmungocJAL-2668 fix broken factory method for colour scheme
 commit | commitdiff | tree
2018-02-27 gmungocJAL-2717 JAL-2668 fixes to HMMER colour scheme display...
commit | commitdiff | tree
2018-02-26 gmungocJAL-2599 test coverage and bug fixes for 'minimal file...
commit | commitdiff | tree
2018-02-23 gmungocJAL-2599 corrected case-insensitive symbol indexing
 commit | commitdiff | tree
2018-02-23 gmungocJAL-2599 parser and datamodel use primitive double...
commit | commitdiff | tree
2018-02-22 gmungocJAL-2629 tidy tests, refactor hmmer node mapping slightly
 commit | commitdiff | tree
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc
 commit | commitdiff | tree
2018-02-21 gmungocJAL-2629 simplifying method signatures in Hmmer command...
commit | commitdiff | tree
2018-02-20 gmungocJAL-2629 removed SequenceI.get/setLastPosition and...
commit | commitdiff | tree
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-02-20 gmungocJAL-2897 updated unit test for code change
 commit | commitdiff | tree
2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF
 commit | commitdiff | tree
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences
 commit | commitdiff | tree
2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes
 commit | commitdiff | tree
2018-02-19 gmungocJAL-2629 formatting only
 commit | commitdiff | tree
2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS...
commit | commitdiff | tree
2018-02-09 gmungocJAL-2789 code format changes only (before functional...
commit | commitdiff | tree
2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
 commit | commitdiff | tree
2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
 commit | commitdiff | tree
2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed...
commit | commitdiff | tree
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
commit | commitdiff | tree
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
commit | commitdiff | tree
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge
 commit | commitdiff | tree
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
commit | commitdiff | tree
2018-02-02 gmungocJAL-984 merged to spikes-mungo
 commit | commitdiff | tree
2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into features...
commit | commitdiff | tree
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotation...
commit | commitdiff | tree
2018-02-02 gmungocJAL-984 better behaved panel height adjuster
 commit | commitdiff | tree
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation
 commit | commitdiff | tree
2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint...
commit | commitdiff | tree
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
commit | commitdiff | tree
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences
 commit | commitdiff | tree
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
commit | commitdiff | tree
2018-01-30 gmungocJAL-2897 formatting change only prior to functional...
commit | commitdiff | tree
2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalview...
commit | commitdiff | tree
2018-01-29 gmungocJAL-1270 testPadGaps() added
 commit | commitdiff | tree
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressions...
commit | commitdiff | tree
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
 commit | commitdiff | tree
2018-01-18 gmungocJAL-2810 JAL-2886 i18n
 commit | commitdiff | tree
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
commit | commitdiff | tree
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retrieved...
commit | commitdiff | tree
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Parent...
commit | commitdiff | tree
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
commit | commitdiff | tree
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
 commit | commitdiff | tree
2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed
 commit | commitdiff | tree
2018-01-10 gmungocJAL-1793 update spike branch to latest
 commit | commitdiff | tree
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor()
 commit | commitdiff | tree
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters...
commit | commitdiff | tree
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview...
commit | commitdiff | tree
2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters...
commit | commitdiff | tree
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
 commit | commitdiff | tree
2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold
 commit | commitdiff | tree
2017-12-14 gmungocJAL-2843 missed Castor class
 commit | commitdiff | tree
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,...
commit | commitdiff | tree
next