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Merge branch 'develop' into features/JAL-2295setChimeraAttributes
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-22
gmungoc
JAL-2337 fix: only adjust once for scroll offset
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2016-11-22
gmungoc
JAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
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2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
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2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
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2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
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2016-11-14
gmungoc
JAL-2296 parse Chimera atomspec to AtomSpec
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2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
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2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-11
gmungoc
JAL-2295 tests now 'network-free' with local PDB and...
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2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
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2016-11-11
gmungoc
JAL-1270 corrected command-line args
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2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
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2016-11-11
gmungoc
JAL-2295 test that verifies transfer of features to...
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2016-11-11
gmungoc
JAL-2295 sorted properties for readability
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2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
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2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
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2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
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2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
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2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
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2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08
gmungoc
JAL-2301 corrected search example to match AA properties...
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2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08
gmungoc
JAL-1961 added link to GFF3 format as well as GFF2
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2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
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2016-11-08
gmungoc
JAL-2295 method added to return a compact mapped range...
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2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
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2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
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2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-07
gmungoc
JAL-1270 renamed helper method so it is not run as...
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2016-11-07
gmungoc
JAL-2272 another test case
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2016-11-07
gmungoc
JAL-1805 groups=Functional added where missing
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2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
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2016-11-07
gmungoc
JAL-2318 updated help text
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
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2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
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2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimera...
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2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04
gmungoc
JAL-2302 unit tests added for Finder
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2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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2016-11-03
gmungoc
JAL-2281 test added to show searchRefs is now not case...
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2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attributes...
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2016-11-02
gmungoc
JAL-2301 table formatted, and corrected to match the...
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 test updated for percentage rounded
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
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2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
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2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
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2016-11-01
gmungoc
JAL-98 typo in javadoc
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2016-11-01
gmungoc
JAL-98 simplified repeat() method
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2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-10-31
gmungoc
JAL-98 round when formatting dec places
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2016-10-31
gmungoc
JAL-1723 ellipsis in tooltip if xrefs to more than...
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2016-10-31
gmungoc
Merge branch 'develop' into features/JAL-1723_sequenceReport
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2016-10-27
gmungoc
JAL-2282 test assertions for 'other' dbsource
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2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
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2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
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2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
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2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
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2016-10-26
gmungoc
JAL-2286 modal residue check + commenting
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2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
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2016-10-26
gmungoc
JAL-2286 javadoc, refactor, unit tests for threshold...
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2016-10-25
gmungoc
JAL-2286 use constant for fixed colours
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2016-10-25
gmungoc
JAL-98 javadoc corrected
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2016-10-25
gmungoc
JAL-98 javadoc added
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2016-10-25
gmungoc
JAL-98 minor fixes to / tests for annotation derivation
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2016-10-25
gmungoc
JAL-98 field comments updated
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2016-10-25
gmungoc
JAL-98 small efficiency fix + commenting
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2016-10-25
gmungoc
JAL-98 javadoc / comments updated
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2016-10-24
gmungoc
JAL-98 fixme comment removed - nothing to do
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2016-10-24
gmungoc
JAL-98 ResidueCount 100% test coverage (and bug fixes!)
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2016-10-24
gmungoc
JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
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2016-10-24
gmungoc
JAL-2283 corrected preferences settings for test
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2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
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2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
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2016-10-13
gmungoc
JAL-2253 2 second timeout on ping URL, default 5 minutes...
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2016-10-13
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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2016-10-13
gmungoc
JAL-1479 revise warning message to suit all contexts
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2016-10-13
gmungoc
JAL-2044 increase Jmol file load timeout from 5 to...
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2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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2016-10-13
gmungoc
JAL-2044 include model name in progress bar message...
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2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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2016-10-11
gmungoc
JAL-2241 check for null jprovider when processing New...
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2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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