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JAL-2360 simplify nucleotide flag, remove setter
2016-12-12 gmungocJAL-2360 simplify nucleotide flag, remove setter
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2016-12-12 gmungocJAL-2361 use consistent colour names on menus
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2016-12-12 gmungocJAL-1544 backgroud -> background
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2016-12-12 gmungocJAL-2362 return correct lower-case colour; Javadoc...
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2016-12-12 gmungocJAL-2632 corrected lookup of residue colour
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2016-12-09 gmungocJAL-2105 updated for reviewed REST version 4.8
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2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
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2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger...
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2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired
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2016-12-07 gmungocJAL-2354 handle error response when fetching features
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2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChooser...
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2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-29 gmungocJAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
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2016-11-28 gmungocMerge branch 'develop' into trialMerge
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2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile()
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2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path
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2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions...
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2016-11-25 gmungocMerge branch 'develop' into trialMerge
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2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
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2016-11-24 gmungocFurther tweaks to get tests passing
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2016-11-24 gmungocFileFormatI further tweaks, clean compile
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2016-11-23 gmungocJAL-1738 Spanish versions added
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2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset
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2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-21 gmungocJAL-2333 test beefed up with gaps
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2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature
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2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18 gmungocJAL-98 with the two types missing from last commit...
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2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array...
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2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
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2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very...
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2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature...
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2016-11-17 gmungocJAL-2327 add isContactFeature
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2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview...
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2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
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2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimera...
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2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera...
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2016-11-08 gmungocJAL-2301 corrected search example to match AA properties...
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2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2
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2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as...
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2016-11-07 gmungocJAL-2272 another test case
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2016-11-07 gmungocJAL-1805 groups=Functional added where missing
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2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
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2016-11-07 gmungocJAL-2318 updated help text
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2016-11-07 gmungocJAL-2282 show url links that need checked; remove ...
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2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04 gmungocJAL-2302 unit tests added for Finder
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2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code...
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2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case...
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2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the...
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2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02 gmungocJAL-98 ProfileI interface for Profile
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2016-11-02 gmungocJAL-98 test updated for percentage rounded
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2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
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2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence...
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2016-11-01 gmungocConservation now using ResidueCount; tests added
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2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash...
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2016-11-01 gmungocJAL-98 typo in javadoc
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2016-11-01 gmungocJAL-98 simplified repeat() method
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2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-10-31 gmungocJAL-98 round when formatting dec places
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2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than...
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2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceReport
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2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource
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2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
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2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box
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2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog
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2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
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2016-10-26 gmungocJAL-2286 modal residue check + commenting
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2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has...
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2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold...
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2016-10-25 gmungocJAL-2286 use constant for fixed colours
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2016-10-25 gmungocJAL-98 javadoc corrected
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2016-10-25 gmungocJAL-98 javadoc added
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2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation
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2016-10-25 gmungocJAL-98 field comments updated
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2016-10-25 gmungocJAL-98 small efficiency fix + commenting
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2016-10-25 gmungocJAL-98 javadoc / comments updated
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2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do
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2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!)
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2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
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2016-10-24 gmungocJAL-2283 corrected preferences settings for test
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2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing...
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2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task...
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2016-10-13 gmungocJAL-2253 2 second timeout on ping URL, default 5 minutes...
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2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts
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2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to...
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2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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