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Merge branch 'JAL-1013_pca_rna_dna' into develop
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
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2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually...
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2012-06-14 jprocterJAL-1115 - synchronized access to group list
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2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to...
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2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new...
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2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignment...
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2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is registered...
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2012-06-14 jprocterformatting
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2012-06-14 jprocterformatting
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2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider...
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2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just...
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2012-06-14 jprocterJAL-1115 trap exception arising from race condition...
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2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of...
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2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker...
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2012-06-14 jprocterJAL-961 potentially helpful println statements when...
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2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from...
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2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs
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2012-06-13 jprocterjavatidy
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2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
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2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
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2012-06-12 jprocterJAL-1115 - use local reference for annotation row
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2012-06-12 jprocterJAL-961, JAL-1115 - pending test to ensure only one...
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2012-06-07 jprocterjavatidy
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2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 more concurrent access...
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2012-06-07 jprocterjavatidy
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2012-06-07 jprocterfix for bug introduced with commit:b81d4d7d46ea8b1c89df086fb...
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2012-06-07 jprocterjavatidy
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2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calculatio...
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2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an...
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2012-06-04 jprocterjavatidy
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2012-05-31 jprocterjavatidy
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2012-05-31 jprocterformatting
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2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
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2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by...
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2012-05-30 jprocterupdated schema to store and recover belowAlignment...
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2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashtables...
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2012-05-30 jprocterformatting
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2012-05-30 jprocterformatting
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2012-05-24 jprocterTODO: JAL-1108
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2012-05-24 jprocterJAL-1078 - removed 'Load Score File' menu item and...
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2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added...
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2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so...
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2012-05-24 jproctertodo: JAL-1105
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2012-05-24 jproctertodo: JAL-1108
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2012-05-24 jprocterensure annotation isn't added twice - note - this could...
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2012-05-24 jprocterJAL-1107 - documentation explaining '*' and '+' in...
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2012-05-24 jprocterpatch for occasional NPE when applet is quit
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2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotation...
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2012-05-23 jprocterJAL-1067 report any warning messages to user
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2012-05-23 jprocterTODO for JAL-976
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2012-05-23 jproctertodo for JAL-1106
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2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation...
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2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
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2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
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2012-05-23 jprocterJAL-1102 todos and status updates when data is added
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2012-05-23 jproctertodo JAL-1104 : functions to refactor
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2012-05-23 jproctertodo: blocked by JAL-1104
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2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus...
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2012-05-22 jprocterupdate the copy constructor
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2012-05-22 jprocterJAL-1065,JAL-1066 propagated notification of colourscheme...
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2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3a03d9...
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2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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2012-05-16 jprocterwarning dialog - fixes JAL-1099
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2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profile...
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2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles
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2012-05-16 jprocterJAL-958 JAL-1086 formatting and remove old code
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2012-05-14 jprocterpack before displaying splashscreen to ensure its preferred...
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2012-05-14 jprocterformatting
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2012-05-14 jprocterJAL-1097 - ensure replace comma for semicolon always...
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2012-05-14 jprocterMerge branch 'JAL-972-jdas' into develop
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2012-05-14 jprocterJAL-1075
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2012-05-14 jprocterJAL-1061,JAL-1075 - first pass at implementing sequence...
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2012-05-14 jprocterclean up old commented code
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2012-05-14 jprocterJAL-1095 - todo
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2012-05-14 jprocterjavadoc
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2012-05-11 jprocterJAL-972 workaround for working out source URL for pre...
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2012-05-11 jprocterformatting
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2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs
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2012-05-11 jprocterJAL-972 local do not have a coordsys element with source...
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2012-05-11 jprocterJAL-424 TODO: new method signature for local source...
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2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around...
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2012-05-10 jprocterJAL-972 JAL-1084 propagate reference to local authentication...
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2012-05-10 jprocterJAL-1083 - graceful failover to single ID query mode...
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2012-05-10 jprocterformatting
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2012-05-10 jprocterJAL-1083 graceful failover to one ID per sequences...
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2012-05-10 jprocterJAL-1075 better layout and info box for source browser
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2012-05-01 jprocterJAL-1075 tweak layout and test display for tree based...
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2012-04-24 jprocterJAL-1075, JAL-1061, JAL-1064 - introduced second tier...
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2012-04-24 jprocterJAL-1064 sequence database sources are stored and retrieved...
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2012-04-24 jprocterJAL-972 correct das registry default URL (JDAS automatically...
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2012-04-24 jprocterJAL-972 - test to distinguish sources based on age...
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2012-04-24 jprocterJAL-1074 fix - missing tag indicating alignments are...
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2012-04-20 jprocterJAL-972, JAL-1072 new default dasregistry.org registry...
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2012-04-20 jprocterJAL-1064 JAL-671 - add tree based database dialog as...
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2012-04-20 jprocterJAL-1064 - hack to create menu item label for each...
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2012-04-20 jprocterJAL-1064 - refactor to iterate over many sources associated...
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2012-04-20 jprocterJAL-972 - correct name when constructing db-source...
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2012-04-20 jprocter(JAL-1071) hacked the square matrix that stores the...
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2012-04-11 jprocterdialog for browsing and selecting datasources hierarchically...
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2012-03-30 jprocterJAL-1062 - recognise and split off the range qualifier...
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