| 2005-09-19 |
amwaterhouse | Alignment of node labels modified
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commit | commitdiff | tree |
| 2005-09-19 |
amwaterhouse | ShowDistances, placeHolders and bootstraps have their...
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commit | commitdiff | tree |
| 2005-09-16 |
amwaterhouse | Check image is not null in fast paint
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commit | commitdiff | tree |
| 2005-09-16 |
amwaterhouse | Set distanceMenu selected true
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Memory settings added to help
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Correct date
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Copy uses fasta format
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | 2.05b
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Add Uracil as X unknown
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | OptionPane warning for out of memory
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | remove system.out
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Remove key listener
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Dont add time to build date
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Add main-class to jar files
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Use equalsIgnoreCase
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Applet has main method, excutable
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commit | commitdiff | tree |
| 2005-09-15 |
amwaterhouse | Logger moved to prefs so that class not found error...
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Preferences updated
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Move bootStrap/distance settings outside thread
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Add end of consensus test for wrapped edit
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | fullSeqId should follow preference value
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Make new frame selected
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Remove system out tests
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Copy and paste uses FASTA format
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Call methods in treeCanvas on init
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | offy changes
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | OutOfMemory try catch
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Use font size, not font height
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Resize for mac
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Use getTreeFont instead of getFont
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | add fontname, size and style for trees
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Font change instead of font size
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Add Export tab
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Make button protected
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | use fontchooser to change fonts
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Center labels
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Save fonts for trees
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Change fonts in Treepanel
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | Add header
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | System.gc after outofmemory
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | PCA is in outofmemory try-catch
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commit | commitdiff | tree |
| 2005-09-14 |
amwaterhouse | TreeFont added, binding rebuilt
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commit | commitdiff | tree |
| 2005-09-13 |
amwaterhouse | Dont respond to mouse movements if alignment wrapped
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commit | commitdiff | tree |
| 2005-09-13 |
amwaterhouse | Give focus to textarea on startup
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commit | commitdiff | tree |
| 2005-09-13 |
amwaterhouse | EPSOptions added
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commit | commitdiff | tree |
| 2005-09-13 |
amwaterhouse | Warn if out of memory
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Remove gaps in regions, not char by char
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Always return true for directories
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | null pointers removed
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Null pointers removed
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Dont fastpaint if movement is zero
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Update overview after change
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Update overview in alignmentChanged
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Size checking in drawGraph
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commit | commitdiff | tree |
| 2005-09-12 |
amwaterhouse | Overview subsamples alignment
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Move tree property change to treePanel
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Only 1 NJtree
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | TreePanel takes viewport
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | REmove unnecessary imports
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Init PCA in thread
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | If no consensus, disable certain colour options
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | update consensus and conservation are in try catch...
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Optimise switch to fastPaint
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Correct mouse pressed bug
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Optimised for wide alignments
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Load in a thread
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Make menuitems protected
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | If vconsensus is null, return
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commit | commitdiff | tree |
| 2005-09-08 |
amwaterhouse | Add lowercase nucleotides to nucleotideHash
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commit | commitdiff | tree |
| 2005-09-02 |
amwaterhouse | Applet search by residue index fixed
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | Add header to file
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | firePropertyChange if sequences deleted
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | Need reference to mainApplet
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | Use propertyListener for alignment edits
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | Sort by added to preferences
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commit | commitdiff | tree |
| 2005-09-01 |
amwaterhouse | No need to recalculate image for font change
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commit | commitdiff | tree |
| 2005-08-31 |
amwaterhouse | Repaint scale panel after unselect all
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commit | commitdiff | tree |
| 2005-08-31 |
amwaterhouse | Must update globalColourScheme with new consensus
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | 2.05
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | UserColour gui modified
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Make 24 colours to be sure
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Validate buttons and fire on mouse press, not mouse...
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Set user colours same as global
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Repaint annotations after edit
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Wrapped, getWidth > vconsensus
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Update colours after remove left, cut, paste
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Keep mouse drag to 1 block when wrapped
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Dont setSelected on new frames
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Out of bounds checks
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Set startSeq 0 if wrap alignment
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Dont set clip if its not null
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Bounds checking
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | If Mac, dont use fastpaint
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commit | commitdiff | tree |
| 2005-08-30 |
amwaterhouse | Can edit in wrapped view
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | Reset all colour schemes after gaps removed
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | Include None in default colours
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | Default user colour is 23 white colours
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | Keep startRes the same after removing columns
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | Reset ClustalX after removing gaps
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commit | commitdiff | tree |
| 2005-08-29 |
amwaterhouse | if seq<0, return
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commit | commitdiff | tree |
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