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removed old VARNA library
2011-08-28 janengelhardtIncluding of VARNAv-3.9;
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2011-08-21 janengelhardtJAL-913; Extending documentation; VARNA help;
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2011-08-19 janengelhardtJAL-913; Documentation of RNA Structure Conservation
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2011-08-16 janengelhardtJAL-842; Text element containing the structure is not...
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2011-08-15 janengelhardtJAL-891; Tooltips for Structure logos implemented;
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2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are available via
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2011-08-15 janengelhardtJAL-891; Labeling of structure conservation is improved...
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2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug...
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2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to AlignmentI and
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2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if...
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2011-08-09 janengelhardtJAL-891; base-pair logos can now be activated for structure
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2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missing...
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2011-08-08 janengelhardtJAL-891; sequence logos are available on structure...
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2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think...
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2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at...
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2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
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2011-07-25 janengelhardtsome print statements to test things
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2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where...
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2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in StockholmF...
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2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences...
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2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence...
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2011-07-25 janengelhardtJAL-842: some bugfixes;
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2011-07-25 janengelhardtJAL-842; Added the TextField to edit structure in VARNA
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2011-07-25 janengelhardtJAL-842; trimming single structures for single sequences...
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2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer...
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2011-07-25 janengelhardtVarna external frame bug solved
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2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks...
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2011-07-25 janengelhardtclean code
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2011-07-25 janengelhardtFurther structure accessing feature
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2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes
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2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included
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2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic...
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2011-07-25 janengelhardtJAL-842, Further creation of VARNA classes (probably...
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2011-07-25 janengelhardtContainer for VARNA classes are created according to...
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2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmentfile...
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2011-07-25 janengelhardt'Add doc for JalviewRNASupport what was done/todo'...
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2011-07-25 janengelhardt'Help files updated with RNA stuff' merge; JAL-580
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2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580
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2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580
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2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580
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2011-07-25 janengelhardtStart merging of Laurens Code
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2011-07-25 janengelhardtNew branch created and author list changed to test...
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