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2017-03-20	tcofoegbu	Merge JAL-2136_phyre2_integration to develop	commit \| commitdiff \| tree
2017-03-17	tcofoegbu	JAL-2136 JAL-2137 Improvements: enable STRUCTMODEL...	commit \| commitdiff \| tree
2017-03-14	tcofoegbu	JAL-2136 JAL-2137 Improved STRUCTMODEL annotation syntax...	commit \| commitdiff \| tree
2017-03-10	tcofoegbu	JAL-2136 JAL-2137 Modified STRUCTMODEL annotation format...	commit \| commitdiff \| tree
2017-02-28	tcofoegbu	JAL-2136 added improvement to parse crudelist file...	commit \| commitdiff \| tree
2017-02-20	tcofoegbu	JAL-2136 merged and resolved conflicts with 80edaa84d6d9beac...	commit \| commitdiff \| tree
2017-02-20	tcofoegbu	Merge branch 'reviews/features/JAL-2136_phyre2_integration_w...	commit \| commitdiff \| tree
2017-01-30	tcofoegbu	Merge branch 'reviews/features/JAL-2136_phyre2_integration_w...	commit \| commitdiff \| tree
2017-01-20	tcofoegbu	JAL-2375 JAL-2376 First commit of implementation for...	commit \| commitdiff \| tree
2016-11-28	tcofoegbu	Merge branch 'features/JAL-2326_JOptionPane-refactoring...	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 added setup method for JvOptionPane in all...	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 added layer of abstraction between Jalview...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	JAL-2322 added runnable interface to HTMLOutput class...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	JAL-2277 bug fix for mis-alligned graphics output for...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	JAL-2332 bugfix to enable structure chooser opening...	commit \| commitdiff \| tree
2016-11-16	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-16	tcofoegbu	JAL-2322 JAL-2309 replaced references to isheadless...	commit \| commitdiff \| tree
2016-11-14	tcofoegbu	JAL-2322 Refactored unified architecture for data ...	commit \| commitdiff \| tree
2016-11-11	tcofoegbu	JAL-2277 Refactored out duplicated method - printUnwrapped...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'bug/JAL-2317_jmol_chimera-chain-factorisation...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'develop' into bug/JAL-2317_jmol_chimera...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	JAL-2317 Fixed Chimera command for hiding/showing distinct...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2280 Updated spanish translation as recommended...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2292 updated method calls	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2292 renamed method and improved implementation...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 squashed bug that breaks feature mapping for...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 added javadoc for compareChar(..) utility...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2195 JAL-2262 house keeping	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 fix for wrong mapping output in sequence mapping...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 Wrote utility method for comparing two char...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 Unit test for utility method for comparing...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	JAL-2312 unit test for bug fix - repeated mapping generated...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	JAL-2312 Bug fix for repeated mapping generation from...	commit \| commitdiff \| tree
2016-11-01	tcofoegbu	JAL-2280 refactored and improved structure file identificati...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	JAL-2280 Improvement to enable drag'n'drop association...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	Merge branch 'features/JAL-2284_export-biojsmsa-via...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	JAL-2284 basic support for exporting BioJS MSA viewer...	commit \| commitdiff \| tree
2016-10-25	tcofoegbu	Merge branch 'bug/JAL-2277_html-output-wrapped-mode...	commit \| commitdiff \| tree
2016-10-25	tcofoegbu	JAL-2277 Improvement to support html+svg export in...	commit \| commitdiff \| tree
2016-10-17	tcofoegbu	JAL-2262 JAL-2195 Improvement to set PDBId availability...	commit \| commitdiff \| tree
2016-10-11	tcofoegbu	Merge branch 'features/JAL-2039_Offer_cached_structurefiles_...	commit \| commitdiff \| tree
2016-10-11	tcofoegbu	JAL-2039 improvement to offer cached structure view...	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	Merge branch 'bug/JAL-2262_dnd-for-local-structure...	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 unit test for bug	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 bug fix for mapping local structure...	commit \| commitdiff \| tree
2016-10-05	tcofoegbu	QQMerge branch 'develop' of https://source.jalview...	commit \| commitdiff \| tree
2016-10-05	tcofoegbu	JAL-1563 JAL-1479 minor house-keeping for Uniprot FTS...	commit \| commitdiff \| tree
2016-09-23	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-23	tcofoegbu	JAL-2164 JAL-1919 fixed failed revert commit	commit \| commitdiff \| tree
2016-09-19	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled PDB file parser configuration...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Revert "JAL-2164 JAL-1919 disabled and removed PDB...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled and removed PDB file parser...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2195 bug fix to enable restoring jmol session save...	commit \| commitdiff \| tree
2016-09-09	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-08	tcofoegbu	JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...	commit \| commitdiff \| tree
2016-08-31	tcofoegbu	JAL-2148 further enhancment to CA HETATM processing	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	JAL-1803 unit test for PDB chainCode save/restore from...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1919 Added improvement to ensure consistence of...	commit \| commitdiff \| tree
2016-08-08	tcofoegbu	replaced broken biojsmsa home link in jalveiw help	commit \| commitdiff \| tree
2016-08-01	tcofoegbu	JAL-2164 bugfix to convert insCodes of '\000' to '...	commit \| commitdiff \| tree
2016-07-29	tcofoegbu	JAL-1957 JAL-1479 updated SIFTS user docs	commit \| commitdiff \| tree
2016-07-29	tcofoegbu	JAL-2157 fixed Jalview2xmlTest	commit \| commitdiff \| tree
2016-07-27	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-27	tcofoegbu	JAL-1919 added codes for End-2-End scan for sequence...	commit \| commitdiff \| tree
2016-07-26	tcofoegbu	JAL-2157 bugfix for issues from enum refactoring	commit \| commitdiff \| tree
2016-07-25	tcofoegbu	JAL-2157 bugfix for regression from commit 82a6c8e2e25b75341...	commit \| commitdiff \| tree
2016-07-22	tcofoegbu	JAL-2148 Bugfix in structureImportSettings string-to...	commit \| commitdiff \| tree
2016-07-21	tcofoegbu	Resolve merge conflict for StructureImportSettings	commit \| commitdiff \| tree
2016-07-21	tcofoegbu	JAL-2148 fix to heuristically determine chain termination...	commit \| commitdiff \| tree
2016-07-19	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-19	tcofoegbu	JAL-1919 set default structure file format to mmCIF...	commit \| commitdiff \| tree
2016-07-14	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-14	tcofoegbu	JAL-1919 house-keeping	commit \| commitdiff \| tree
2016-07-13	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-13	tcofoegbu	JAL-2135 minor house-keeping	commit \| commitdiff \| tree
2016-07-12	tcofoegbu	JAL-2135 NPE bugfix when parsing a structure file with...	commit \| commitdiff \| tree
2016-07-08	tcofoegbu	JAL-1919 Fixed failing tests, enabled HETATM processing...	commit \| commitdiff \| tree
2016-07-01	tcofoegbu	JAL-2135 bugfix for error preventing processing of...	commit \| commitdiff \| tree
2016-06-30	tcofoegbu	JAL-2074 Improvement to StructureChooser and FTS interfaces...	commit \| commitdiff \| tree
2016-06-30	tcofoegbu	JAL-1919 updated PDBSequenceFetcherTest and JMol parser...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	JAL-1479 added test case to elaborate getEntityByMostOptimal...	commit \| commitdiff \| tree
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