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JAL-2490 performant lookup of features for sorting
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting
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2017-05-19 gmungocJAL-2490 only count sequences where feature overlap...
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2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc
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2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring
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2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass"
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2017-05-18 gmungocJAL-2490 lookup features at each column position
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2017-05-18 gmungocJAL-2543 html-encode quote characters in feature description
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2017-05-18 gmungocJAL-2490 retrieve visible features only
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2017-05-18 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed
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2017-05-16 gmungocJAL-2505 refactored method removed
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2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceFeature
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2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
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2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeature...
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2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type
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2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring
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2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
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2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overlap...
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2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed
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2017-05-15 gmungocJAL-2480 redundant code removed
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2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes
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2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups...
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2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
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2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied...
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2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComparator
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2017-05-12 gmungocJAL-2480 efficient test for features present on sequence
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2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeComparator
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2017-05-09 gmungocJAL-1632 correct i18n and NPE
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2017-05-09 gmungocJAL-2403 use preferred factory method to create score...
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2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetSequence
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2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null...
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2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final...
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2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in SequenceFeature
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2017-05-08 gmungocJAL-2505 refactored SequenceFeature construction so...
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2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation
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2017-05-08 gmungocJAL-1632 i18n for warning messages
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2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'...
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2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Sequence...
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2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
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2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
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2017-05-04 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature
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2017-05-04 gmungocJAL-2480 JAL-2505 guard against duplicating links
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2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions
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2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-03 gmungocJAL-2246 test a Uniprot fetch
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2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
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2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary
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2017-05-02 gmungocJAL-1933 Spanish for Occupancy
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2017-05-02 gmungocJAL-2499 inlined two 1-line methods
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2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
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2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
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2017-05-01 gmungocMerge remote-tracking branch
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2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures()
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2017-04-27 gmungocJAL-2480 don't allow null type in SequenceFeature
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2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature...
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2017-04-25 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise threading...
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2017-04-24 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-24 gmungocJAL-2424 final contig now an inclusive range
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2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors
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2017-04-21 gmungocJAL-2295 Spanish translations added
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2017-04-21 gmungocJAL-2361 Spanish text added
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2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
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2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning...
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2017-04-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-04-19 gmungocJAL-2435 mirror font changes with middle mouse drag
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2017-04-19 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and...
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2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types...
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2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature
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2017-04-18 gmungocJAL-2480 more test coverage
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2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc
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2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api
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2017-04-17 gmungocJAL-2446 comment updates
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2017-04-17 gmungocJAL-2446 promote Range from test to src to replace...
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2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in FeatureStore
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2017-04-17 gmungocJAL-2446 add call to SequenceFeatures.delete(); use...
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2017-04-17 gmungocMerge branch 'develop' into features/JAL-2446NCList
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2017-04-17 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-12 gmungocJAL-2361 tweak layout of warning message
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2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
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2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
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2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable
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2017-04-12 gmungocJAL-2403 public static methods to convert distance...
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2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
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